DN617558

Overview
NameDN617558
Unique NameDN617558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:916..1525. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATC_RAT (Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Ctsc PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 35/93 (37.63%), Postives = 54/93 (58.06%), Query Frame = -3
Query:  348 LVKHGPLAVG--INAVWMQTYIG-----GVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGVD 605
            LVKHGP+AV   ++  ++  + G     G+S P+   +  +H VL+VGYG      +      YWI+KNSWG  WGE+GY++I  G + C ++
Sbjct:  363 LVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGL-----DYWIVKNSWGSQWGESGYFRIRRGTDECAIE 450          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 34/84 (40.48%), Postives = 48/84 (57.14%), Query Frame = -3
Query:  351 PLAVGINAV-WMQTYIGGVSCPYICGKY---LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 590
            P++V    +   + Y  GV     CG     ++H VL VGYG     P       YW+IKNSWG +WG+NGY+K+ MG+N+CG+
Sbjct:  276 PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGVP-------YWLIKNSWGADWGDNGYFKMEMGKNMCGI 352          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_NPVHC (Viral cathepsin OS=Hyphantria cunea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = -3
Query:  351 GPLAVGINAVWMQTYIGGVSCPYICGKY-LDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 593
            GP+ V I+A  +  Y  G+     C  Y  +H VL+VGYG            PYWI+KN+WGE+WGE GY+++    N CG+
Sbjct:  241 GPIPVAIDASDIVNYRRGIM--RYCSNYGFNHAVLLVGYGVEN-------NVPYWILKNTWGEDWGEQGYFRVQQNINACGI 313          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.787e-11
Identity = 33/85 (38.82%), Postives = 48/85 (56.47%), Query Frame = -3
Query:  351 LVKHGPLAVGINAVWMQTYIGGVSCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 605
            L + GP++V I+ V +  Y  GV+        L+HGVL+VGYG          +  YW +KNSWG +WGE G+++I    N CG+
Sbjct:  255 LHEKGPVSVAIDVVDLTNYKSGVAKHCSVDHGLNHGVLLVGYGQEN-------DVKYWTLKNSWGSDWGEQGFFRIKRDVNSCGI 332          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 37/85 (43.53%), Postives = 47/85 (55.29%), Query Frame = -3
Query:  351 GPLAVGINAVW--MQTYIGGVSCPYICG-KYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 593
            GP++V ++A     Q Y  G+     C  K LDHGVL+VGYG  G          YW++KNSWG  WG NGY KI   + N CG+
Sbjct:  244 GPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEG---ANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 325          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  351 GPLAVGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 593
            GP++V ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG+ WG +GY KI   R N CG+
Sbjct:  243 GPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDK---YWLVKNSWGKEWGMDGYIKIAKDRNNHCGL 324          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = -3
Query:  351 GPLAVGINAVWM--QTYIGGVSCPYICGK-YLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 593
            GP++V I+A     Q Y  GV     C   +LDHGVL VGYG+          K YW++KNSWG +WG+ GY K+   R N CG+
Sbjct:  235 GPISVAIDASHFSFQFYSSGVYYEQNCSPTFLDHGVLAVGYGTES-------TKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGI 312          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = -3
Query:  351 GPLAVGINAVWMQTYIGGV--SCPYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGRNVCGV 593
            GP+ + I+A  +  Y  GV  SC       L+H VL+VGYG     P       YW+ KN+WG++WGENGY+++    N CG+
Sbjct:  273 GPIPMAIDAADIVNYYRGVISSCE---NNGLNHAVLLVGYGVENGVP-------YWVFKNTWGDDWGENGYFRVRQNVNACGM 345          
BLAST of DN617558 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = -3
Query:  351 GPLAVGINAVW--MQTYIGGVSC-PYICGKYLDHGVLIVGYGSSGFAPIRFKEKPYWIIKNSWGENWGENGYYKICMGR-NVCGV 593
            GP++V ++A    +Q Y  G+   P    K LDHGVL+VGYG  G    + K   YW++KNSWG  WG  GY KI   R N CG+
Sbjct:  243 GPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNK---YWLVKNSWGSEWGMEGYIKIAKDRDNHCGL 324          
The following BLAST results are available for this feature:
BLAST of DN617558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CATC_RAT2.220e-1137.63Dipeptidyl-peptidase 1 OS=Rattus norvegicus GN=Cts... [more]
ORYC_ORYSJ3.787e-1140.48Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATV_NPVHC3.787e-1140.24Viral cathepsin OS=Hyphantria cunea nuclear polyhe... [more]
CATV_GVXN3.787e-1138.82Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CATL2_HUMAN4.945e-1143.53Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CATL1_RAT4.945e-1144.71Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CYSP3_HOMAM6.459e-1143.53Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATV_NPVLD6.459e-1139.76Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]
CATL1_MOUSE8.435e-1144.71Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01G01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617558 ID=DN617558; Name=DN617558; organism=Citrus sinensis; type=EST; length=610bp
TCTACTANTTTTGAGTTACATAAAAAGAAAATATAACATTATAATATTTC
TACAAGCCTGCCCAATATAAAAAGAAAATATTAATACCATCTTCAATAAC
AATTCTGTAGCATGGTTAACTATAAAATGGATAAATATTACATTCTGACA
TGACATATGCTTAAATATTACAAGAGCATATAAAGTTCATGCCTCAGCCC
ACGCATGTAGGCATCCTTATAATTGCAGACGGCTATTTAAAAGGATATCC
TATAATATCTTCGTATATAAGCTCCACTTGCCTAGCACAACCTCCATAAT
GTCTAGCTTGAGGTTGTATGGACAGCAGCTACAGATGAGACCATGGAGTC
GACCCCACAGACATTGCGACCCATGCAGATCTTATAATATCCATTCTCTC
CCCAGTTCTCTCCCCAGGAGTTCTTTATGATCCAGTAAGGCTTCTCCTTG
AAACGGATCGGGGCGAAACCTGAAGATCCATAGCCCACGATAAGCACTCC
ATGATCCAAATACTTCCCGCAAATGTATGGGCATGAAACTCCTCCAATAT
ATGTTTGCATCCAAACGGCATTGATACCCACTGCCAGAGGGCCATGTTTC
ACCAAATTTG
back to top