DN617556

Overview
NameDN617556
Unique NameDN617556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617556_ssr133 microsatellite DN617556_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5733 contig Csv1_Contig5733:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP5_MOUSE (Serine/threonine-protein phosphatase 5 OS=Mus musculus GN=Ppp5c PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  327 VTVCGDIHGQFYDLIELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +TVCGD HGQFYDL+ +F + G   +TN Y+F GD+VDRG +SVE +  L   K+ Y D   +LRGNHE+
Sbjct:  237 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHET 306          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP5_HUMAN (Serine/threonine-protein phosphatase 5 OS=Homo sapiens GN=PPP5C PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.562e-16
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  327 VTVCGDIHGQFYDLIELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +TVCGD HGQFYDL+ +F + G   +TN Y+F GD+VDRG +SVE +  L   K+ Y D   +LRGNHE+
Sbjct:  237 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHET 306          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP5_ARATH (Serine/threonine-protein phosphatase 5 OS=Arabidopsis thaliana GN=PAPP5 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  273 QARAILVEEWNVQPVKCP----VTVCGDIHGQFYDLIELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            Q R IL+   ++  +  P    +TVCGD+HGQFYDL+ +F + G   + N YLF GD+VDRG +SVE +  L A K      I + RGNHES
Sbjct:  255 QTRQILLALPSLVDISVPHGKHITVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSVEIILTLFAFKCMCPSSIYLARGNHES 346          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP5_SOLLC (Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.142e-14
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3
Query:  330 TVCGDIHGQFYDLIELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            TVCGD+HGQFYDL+ +F + G   + N YLF GD+VDRG +S+E +  L A K      I + RGNHES
Sbjct:  296 TVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMCPSAIHLARGNHES 364          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPT1_YEAST (Serine/threonine-protein phosphatase T OS=Saccharomyces cerevisiae GN=PPT1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.787e-13
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  234 KPLPEAEVKTLCDQARAI------LVEEWNVQPVKCPVTVCGDIHGQFYDLIELFR-IGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            K LP+  V  +   A  +      +VE  N       ++VCGD HGQFYD++ LFR  G   P   YLF GD+VDRG +S E   L   LK+ + +   + RGNHES
Sbjct:  207 KYLPKKYVAAIISHADTLFRQEPSMVELENNSTPDVKISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHES 313          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: YY06_CAEEL (Putative serine/threonine-protein phosphatase C27B7.6 OS=Caenorhabditis elegans GN=C27B7.6 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 3.048e-13
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = 3
Query:  306 VQPVKC------PVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            ++P+ C      PV V GDIHGQ  DL++     G  PD  YLF+GDYVDRG  S+E    L  +K+ +  ++ +LRGNHE
Sbjct:   47 LEPLPCLIEIIAPVVVFGDIHGQLGDLLQFTNEVGRPPDFQYLFLGDYVDRGPNSLEVTVWLFCMKILFSKKVHLLRGNHE 127          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPT1_SCHPO (Serine/threonine-protein phosphatase T OS=Schizosaccharomyces pombe GN=ppt1 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.048e-13
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 3
Query:  312 PVKCPVT--VCGDIHGQFYDLIELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            PVK   T  +CGD HGQ++DL+ +F++ G    TN YLF GD+VDRG +S E    L A K+ Y D + I RGNHE+
Sbjct:  205 PVKGDETLVICGDTHGQYFDLLNIFKLHGPPSPTNKYLFNGDFVDRGSWSTEVAFTLYAYKLLYPDAVFINRGNHET 281          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP7_ARATH (Serine/threonine-protein phosphatase 7 OS=Arabidopsis thaliana GN=PP7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.853e-11
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 3
Query:  327 VTVCGDIHGQFYDLIELFR-IGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            V V GDIHGQ +DL+ L +  G    +  Y+F GDYVDRG + +ET  +L++ KV   DR+ +LRGNHES
Sbjct:   79 VVVVGDIHGQLHDLLFLLKDTGFPCQNRCYVFNGDYVDRGAWGLETFLVLLSWKVLMPDRVYLLRGNHES 148          
The following BLAST results are available for this feature:
BLAST of DN617556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPP5_MOUSE6.562e-1652.86Serine/threonine-protein phosphatase 5 OS=Mus musc... [more]
PPP5_HUMAN6.562e-1652.86Serine/threonine-protein phosphatase 5 OS=Homo sap... [more]
PPP5_ARATH7.255e-1545.65Serine/threonine-protein phosphatase 5 OS=Arabidop... [more]
PPP5_SOLLC6.142e-1452.17Serine/threonine-protein phosphatase 5 OS=Solanum ... [more]
PPT1_YEAST1.787e-1340.19Serine/threonine-protein phosphatase T OS=Saccharo... [more]
YY06_CAEEL3.048e-1344.44Putative serine/threonine-protein phosphatase C27B... [more]
PPT1_SCHPO3.048e-1349.35Serine/threonine-protein phosphatase T OS=Schizosa... [more]
PPP7_ARATH2.853e-1150.00Serine/threonine-protein phosphatase 7 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617556 ID=DN617556; Name=DN617556; organism=Citrus sinensis; type=EST; length=535bp
AAGAAAAATAATTACCAAGTAATGAGTCAATGATAGAGAGAACAAATTCA
TTCCGATCATCTAAGGGCTTCGTTTTCGTAATCCGCAACCCTATTTCTAA
ACAGTCTATCGATTTTCTAACTATCTAGGATTTCGATCGATCGATCTGTG
GATCTGCTGCGATCTAAACTTAGAGTGAAACGATGCCGTCGCACGGGGAT
CTGGACAGGCAGATCGAGCACTTGATGGAGTGCAAGCCGTTACCGGAGGC
GGAGGTGAAGACACTGTGCGATCAAGCAAGAGCGATTTTGGTGGAGGAGT
GGAACGTGCAGCCGGTCAAGTGTCCGGTCACCGTTTGCGGCGATATTCAC
GGTCAATTTTATGATCTAATCGAGCTCTTTCGCATAGGTGGAAATGCTCC
TGACACTAATTATCTCTTTATGGGTGATTACGTAGATCGGGGTTACTATT
CAGTGGAAACTGTCACACTATTGGTGGCACTGAAAGTTCGATACAGAGAT
AGAATTACAATCCTAAGAGGGAATCATGAGAGTCG
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