DN617556

Overview
NameDN617556
Unique NameDN617556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617556_ssr133 microsatellite DN617556_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5733 contig Csv1_Contig5733:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AA_MOUSE (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Mus musculus GN=Ppp2ca PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.188e-47
Identity = 87/112 (77.68%), Postives = 102/112 (91.07%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD+ IE L ECK L E++VK+LC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYR+RITILRGNHES
Sbjct:    9 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AA_HUMAN (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Homo sapiens GN=PPP2CA PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.188e-47
Identity = 87/112 (77.68%), Postives = 102/112 (91.07%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD+ IE L ECK L E++VK+LC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYR+RITILRGNHES
Sbjct:    9 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AA_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Bos taurus GN=PPP2CA PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.188e-47
Identity = 87/112 (77.68%), Postives = 102/112 (91.07%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD+ IE L ECK L E++VK+LC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYR+RITILRGNHES
Sbjct:    9 ELDQWIEQLNECKQLSESQVKSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A_MEDSA (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Medicago sativa GN=PP2A PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 9.388e-47
Identity = 88/112 (78.57%), Postives = 98/112 (87.50%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DL+ QI  LM+CKPL E +VK LC++A+ IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDRGYYSVETVTLLVALKVRY  RITILRGNHES
Sbjct:   13 DLNEQISQLMQCKPLSEQQVKELCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHES 124          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A3_ARATH (Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.226e-46
Identity = 87/112 (77.68%), Postives = 97/112 (86.61%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD QI  LM+CKPL E +V+ LC++A+ IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDRGYYSVETVTLLV LKVRY  RITILRGNHES
Sbjct:   13 DLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVGLKVRYPQRITILRGNHES 124          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A4_ARATH (Serine/threonine-protein phosphatase PP2A-4 catalytic subunit OS=Arabidopsis thaliana GN=PP2A4 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.601e-46
Identity = 87/112 (77.68%), Postives = 98/112 (87.50%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD QI  LM+CKPL E +V+ LC++A+ IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDRGYYSVETVTLLVALK+RY  RITILRGNHES
Sbjct:   13 DLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGMCPDTNYLFMGDYVDRGYYSVETVTLLVALKMRYPQRITILRGNHES 124          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A_BRANA (Serine/threonine-protein phosphatase PP2A catalytic subunit (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 2.091e-46
Identity = 87/112 (77.68%), Postives = 97/112 (86.61%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD QI  LM+CKPL E +V+ LC++A+ IL++E NVQPVK PVT+CGDIHGQF+DL ELFRIGG  PDTNYLFMGDYVDRGYYSVETVTLLV LKVRY  RITILRGNHES
Sbjct:    9 DLDEQISQLMQCKPLSEQQVRALCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGMCPDTNYLFMGDYVDRGYYSVETVTLLVGLKVRYPQRITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AB_BOVIN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Bos taurus GN=PPP2CB PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 4.659e-46
Identity = 86/112 (76.79%), Postives = 100/112 (89.29%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+ +E L ECK L E +V+TLC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRY +RITILRGNHES
Sbjct:    9 DLDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A1_NEUCR (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Neurospora crassa GN=pph-1 PE=3 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 7.947e-46
Identity = 86/111 (77.48%), Postives = 99/111 (89.19%), Query Frame = 3
Query:  201 LDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            LD  IE LM CK L E++V+ LC++AR +L +E NVQPVKCPVTVCGDIHGQF+DL+ELF+IGG+ PDTNYLFMGDYVDRGYYSVETVTLLVALK+RY +RITILRGNHES
Sbjct:   28 LDGWIESLMNCKQLAESDVQRLCEKAREVLQDESNVQPVKCPVTVCGDIHGQFHDLMELFKIGGSCPDTNYLFMGDYVDRGYYSVETVTLLVALKIRYPNRITILRGNHES 138          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A2_ERYGR (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Erysiphe graminis subsp. hordei GN=PP2A-2 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.038e-45
Identity = 88/111 (79.28%), Postives = 96/111 (86.49%), Query Frame = 3
Query:  201 LDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            LD  IE+LM CK LPE +V  LC++AR +L  E NVQPVKCPVTVCGDIHGQF+DL+ELFRIGG  PDTNYLFMGDYVDRGYYSVETVTLLVALK+RY  RITILRGNHES
Sbjct:   29 LDGWIENLMACKQLPEVDVLRLCEKAREVLHSESNVQPVKCPVTVCGDIHGQFHDLMELFRIGGPNPDTNYLFMGDYVDRGYYSVETVTLLVALKIRYPQRITILRGNHES 139          
The following BLAST results are available for this feature:
BLAST of DN617556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PP2AA_MOUSE7.188e-4777.68Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AA_HUMAN7.188e-4777.68Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AA_BOVIN7.188e-4777.68Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A_MEDSA9.388e-4778.57Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A3_ARATH1.226e-4677.68Serine/threonine-protein phosphatase PP2A-3 cataly... [more]
PP2A4_ARATH1.601e-4677.68Serine/threonine-protein phosphatase PP2A-4 cataly... [more]
PP2A_BRANA2.091e-4677.68Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2AB_BOVIN4.659e-4676.79Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A1_NEUCR7.947e-4677.48Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A2_ERYGR1.038e-4579.28Serine/threonine-protein phosphatase PP2A-2 cataly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617556 ID=DN617556; Name=DN617556; organism=Citrus sinensis; type=EST; length=535bp
AAGAAAAATAATTACCAAGTAATGAGTCAATGATAGAGAGAACAAATTCA
TTCCGATCATCTAAGGGCTTCGTTTTCGTAATCCGCAACCCTATTTCTAA
ACAGTCTATCGATTTTCTAACTATCTAGGATTTCGATCGATCGATCTGTG
GATCTGCTGCGATCTAAACTTAGAGTGAAACGATGCCGTCGCACGGGGAT
CTGGACAGGCAGATCGAGCACTTGATGGAGTGCAAGCCGTTACCGGAGGC
GGAGGTGAAGACACTGTGCGATCAAGCAAGAGCGATTTTGGTGGAGGAGT
GGAACGTGCAGCCGGTCAAGTGTCCGGTCACCGTTTGCGGCGATATTCAC
GGTCAATTTTATGATCTAATCGAGCTCTTTCGCATAGGTGGAAATGCTCC
TGACACTAATTATCTCTTTATGGGTGATTACGTAGATCGGGGTTACTATT
CAGTGGAAACTGTCACACTATTGGTGGCACTGAAAGTTCGATACAGAGAT
AGAATTACAATCCTAAGAGGGAATCATGAGAGTCG
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