DN617556

Overview
NameDN617556
Unique NameDN617556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617556_ssr133 microsatellite DN617556_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5733 contig Csv1_Contig5733:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AB_RAT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Rattus norvegicus GN=Ppp2cb PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.356e-45
Identity = 85/112 (75.89%), Postives = 100/112 (89.29%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD+ +E L ECK L E +V+TLC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRY +RITILRGNHES
Sbjct:    9 ELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AB_RABIT (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Oryctolagus cuniculus GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.356e-45
Identity = 85/112 (75.89%), Postives = 100/112 (89.29%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD+ +E L ECK L E +V+TLC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRY +RITILRGNHES
Sbjct:    9 ELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AB_MOUSE (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Mus musculus GN=Ppp2cb PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.356e-45
Identity = 85/112 (75.89%), Postives = 100/112 (89.29%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD+ +E L ECK L E +V+TLC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRY +RITILRGNHES
Sbjct:    9 ELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AB_HUMAN (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform OS=Homo sapiens GN=PPP2CB PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.356e-45
Identity = 85/112 (75.89%), Postives = 100/112 (89.29%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD+ +E L ECK L E +V+TLC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRY +RITILRGNHES
Sbjct:    9 ELDQWVEQLNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A1_EMENI (Serine/threonine-protein phosphatase PP2A catalytic subunit OS=Emericella nidulans GN=pphA PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 1.356e-45
Identity = 88/111 (79.28%), Postives = 95/111 (85.59%), Query Frame = 3
Query:  201 LDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            LD  IE LM CK L E +V+ LCD+AR +L EE NVQPVKCPVTVCGDIHGQF+DL+ELFRIGG  PDTNYLFMGDYVDRGYYSVETVTLLV LK+RY  RITILRGNHES
Sbjct:   30 LDGWIESLMTCKQLAEEDVRRLCDRAREVLQEESNVQPVKCPVTVCGDIHGQFHDLMELFRIGGPNPDTNYLFMGDYVDRGYYSVETVTLLVCLKIRYPQRITILRGNHES 140          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AA_CHICK (Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform OS=Gallus gallus GN=PPP2CA PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.312e-45
Identity = 84/112 (75.00%), Postives = 101/112 (90.18%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD+ IE L EC+ L E++V++LC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRY +RITILRGNHES
Sbjct:    9 ELDQWIEQLNECRQLSESQVRSLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A_ACECL (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Acetabularia cliftonii PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.499e-44
Identity = 86/117 (73.50%), Postives = 96/117 (82.05%), Query Frame = 3
Query:  183 MPSHGDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            M  +  LD  IEHLM+CKPLPE  VK L  +AR +   E NVQPVK PVTVCGDIHGQF+D++ELF+IGG  PDTNYLFMGDYVDRGY SVETVTLLV+LKVRY +RITILRGNHES
Sbjct:    1 MVVYKQLDEWIEHLMQCKPLPEENVKELVAKAREVFSNEKNVQPVKMPVTVCGDIHGQFHDMVELFKIGGTCPDTNYLFMGDYVDRGYNSVETVTLLVSLKVRYPERITILRGNHES 117          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A2_SCHPO (Major serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Schizosaccharomyces pombe GN=ppa2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.499e-44
Identity = 83/113 (73.45%), Postives = 101/113 (89.38%), Query Frame = 3
Query:  195 GDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            GD+DR IE L +C+PL EA+V+ LCD+AR +L +E NVQPV+ PVTVCGDIHGQF+DL+ELF+IGG+ PD NYLFMGDYVDRGY+SVETV+LLVA+K+RY +RITILRGNHES
Sbjct:   21 GDVDRWIEQLKKCEPLSEADVEMLCDKAREVLCQENNVQPVRNPVTVCGDIHGQFHDLMELFKIGGDVPDMNYLFMGDYVDRGYHSVETVSLLVAMKLRYPNRITILRGNHES 133          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C_RABIT (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Oryctolagus cuniculus GN=PPP4C PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.164e-43
Identity = 84/117 (71.79%), Postives = 97/117 (82.91%), Query Frame = 3
Query:  183 MPSHGDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            M    DLDRQIE L+ C+ + E+EVK LC +AR ILVEE NVQ V  PVTVCGDIHGQFYDL ELFR+GG+ P+TNYLFMGD+VDRG+YSVET  LL+ALKVRY DRIT++RGNHES
Sbjct:    1 MAEISDLDRQIEQLLRCELIKESEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 117          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AB_PIG (Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform (Fragment) OS=Sus scrofa GN=PPP2CB PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 2.164e-43
Identity = 82/104 (78.85%), Postives = 94/104 (90.38%), Query Frame = 3
Query:  222 LMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            L ECK L E +V+TLC++A+ IL +E NVQ V+CPVTVCGD+HGQF+DL+ELFRIGG +PDTNYLFMGDYVDRGYYSVETVTLLVALKVRY +RITILRGNHES
Sbjct:    1 LNECKQLNENQVRTLCEKAKEILTKESNVQEVRCPVTVCGDVHGQFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPERITILRGNHES 104          
The following BLAST results are available for this feature:
BLAST of DN617556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PP2AB_RAT1.356e-4575.89Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_RABIT1.356e-4575.89Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_MOUSE1.356e-4575.89Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2AB_HUMAN1.356e-4575.89Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A1_EMENI1.356e-4579.28Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2AA_CHICK2.312e-4575.00Serine/threonine-protein phosphatase 2A catalytic ... [more]
PP2A_ACECL1.499e-4473.50Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PP2A2_SCHPO1.499e-4473.45Major serine/threonine-protein phosphatase PP2A-2 ... [more]
PP4C_RABIT2.164e-4371.79Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2AB_PIG2.164e-4378.85Serine/threonine-protein phosphatase 2A catalytic ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617556 ID=DN617556; Name=DN617556; organism=Citrus sinensis; type=EST; length=535bp
AAGAAAAATAATTACCAAGTAATGAGTCAATGATAGAGAGAACAAATTCA
TTCCGATCATCTAAGGGCTTCGTTTTCGTAATCCGCAACCCTATTTCTAA
ACAGTCTATCGATTTTCTAACTATCTAGGATTTCGATCGATCGATCTGTG
GATCTGCTGCGATCTAAACTTAGAGTGAAACGATGCCGTCGCACGGGGAT
CTGGACAGGCAGATCGAGCACTTGATGGAGTGCAAGCCGTTACCGGAGGC
GGAGGTGAAGACACTGTGCGATCAAGCAAGAGCGATTTTGGTGGAGGAGT
GGAACGTGCAGCCGGTCAAGTGTCCGGTCACCGTTTGCGGCGATATTCAC
GGTCAATTTTATGATCTAATCGAGCTCTTTCGCATAGGTGGAAATGCTCC
TGACACTAATTATCTCTTTATGGGTGATTACGTAGATCGGGGTTACTATT
CAGTGGAAACTGTCACACTATTGGTGGCACTGAAAGTTCGATACAGAGAT
AGAATTACAATCCTAAGAGGGAATCATGAGAGTCG
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