DN617556

Overview
NameDN617556
Unique NameDN617556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617556_ssr133 microsatellite DN617556_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5733 contig Csv1_Contig5733:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4CB_DANRE (Serine/threonine-protein phosphatase 4 catalytic subunit B OS=Danio rerio GN=ppp4cb PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.393e-42
Identity = 83/117 (70.94%), Postives = 95/117 (81.20%), Query Frame = 3
Query:  183 MPSHGDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            M    DLDRQI+ L  C+ + E EVK LC +AR ILVEE NVQ V  PVTVCGDIHGQFYDL ELFR+GG+ P+TNYLFMGD+VDRG+YSVET  LL+ALKVRY DRIT++RGNHES
Sbjct:    1 MGDMSDLDRQIDQLRRCELIKENEVKALCAKAREILVEESNVQRVDSPVTVCGDIHGQFYDLKELFRVGGDVPETNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 117          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A1_SCHPO (Minor serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Schizosaccharomyces pombe GN=ppa1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 5.331e-42
Identity = 79/113 (69.91%), Postives = 94/113 (83.19%), Query Frame = 3
Query:  195 GDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            G++DR IE L  C+PL E +V  +CD A+ +L  E NVQ V+CPVTVCGDIHGQF+DL+ELF IGG +PDTNYLFMGDYVDRGY+SVETV+LL+A K+RY  RITILRGNHES
Sbjct:    8 GEVDRWIEQLSRCEPLSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLFMGDYVDRGYHSVETVSLLIAFKIRYPQRITILRGNHES 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C_DICDI (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Dictyostelium discoideum GN=ppp4c PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.962e-42
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLDRQIE L  C+ + E+EV+ LC +AR IL+EE NVQ V  PVT+CGDIHGQFYDL ELF++GG+ P TNYLFMGD+VDRG+YSVET  LL+ALKVRY DRIT++RGNHES
Sbjct:    4 DLDRQIEQLKRCEIIKESEVRALCSKAREILLEEGNVQRVDSPVTICGDIHGQFYDLKELFKVGGDCPQTNYLFMGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 115          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPX4_PARTE (Serine/threonine-protein phosphatase PP-X homolog 4 OS=Paramecium tetraurelia GN=Ppx4 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.551e-41
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 3
Query:  189 SHGDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            S  DLDRQI  L  C+ + E EVK LC +AR ILVEE NVQ V  PVT+CGDIHGQF+DL+ELF++GG+ PDTNYLF+GD+VDRG+ SVET  LL+ALKVRY DRIT++RGNHES
Sbjct:    2 SQSDLDRQIAQLRNCENITEGEVKALCTKAREILVEESNVQRVDAPVTICGDIHGQFFDLMELFKVGGDCPDTNYLFLGDFVDRGFNSVETFLLLLALKVRYPDRITLIRGNHES 116          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPX3_PARTE (Serine/threonine-protein phosphatase PP-X homolog 3 OS=Paramecium tetraurelia GN=Ppx3 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.551e-41
Identity = 79/115 (68.70%), Postives = 94/115 (81.74%), Query Frame = 3
Query:  189 SHGDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            S  DLDRQI  L  C+ + E EVK LC +AR ILVEE NVQ V  PVT+CGDIHGQF+DL+ELF++GG+ PDTNYLF+GD+VDRG+ SVET  LL+ALKVRY DRIT++RGNHES
Sbjct:    2 SQSDLDRQIAQLRNCENITEGEVKALCTKAREILVEESNVQRVDAPVTICGDIHGQFFDLMELFKVGGDCPDTNYLFLGDFVDRGFNSVETFLLLLALKVRYPDRITLIRGNHES 116          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPX2_ARATH (Serine/threonine-protein phosphatase PP-X isozyme 2 OS=Arabidopsis thaliana GN=PPX2 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 7.698e-41
Identity = 78/112 (69.64%), Postives = 93/112 (83.04%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+QIE L  C+ L E+EVK LC +A  ILVEE NVQ V  PVT+CGDIHGQFYD+ ELF++GG+ P TNYLF+GD+VDRG+YSVET  LL+ALKVRY DRIT++RGNHES
Sbjct:    3 DLDKQIEQLKRCEALKESEVKALCLKAMEILVEESNVQRVDAPVTICGDIHGQFYDMKELFKVGGDCPKTNYLFLGDFVDRGFYSVETFLLLLALKVRYPDRITLIRGNHES 114          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEBR (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis briggsae GN=pph-4.1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.698e-41
Identity = 78/120 (65.00%), Postives = 97/120 (80.83%), Query Frame = 3
Query:  174 SETMPSHGDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            S+ + +H DLDR IE LM C+ + E +VKTLC +AR IL EE NVQ +  PVT+CGDIHGQFYDL+ELFR+GG  P+TNYLF+GD+VDRG+YSVET  LL+ALK RY DR+ ++RGNHES
Sbjct:   24 SDQLSTH-DLDRHIEKLMRCELIAEQDVKTLCAKAREILAEEGNVQVIDSPVTICGDIHGQFYDLMELFRVGGPVPNTNYLFLGDFVDRGFYSVETFLLLLALKARYPDRMMLIRGNHES 142          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C1_CAEEL (Serine/threonine-protein phosphatase 4 catalytic subunit 1 OS=Caenorhabditis elegans GN=pph-4.1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.715e-40
Identity = 77/120 (64.17%), Postives = 97/120 (80.83%), Query Frame = 3
Query:  174 SETMPSHGDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            S+ + +H DLDR IE LM C+ + E +VKTLC +AR IL EE NVQ +  PVT+CGDIHGQFYDL+ELF++GG  P+TNYLF+GD+VDRG+YSVET  LL+ALK RY DR+ ++RGNHES
Sbjct:   24 SDQLTTH-DLDRHIEKLMRCELIAEQDVKTLCAKAREILAEEGNVQVIDSPVTICGDIHGQFYDLMELFKVGGPVPNTNYLFLGDFVDRGFYSVETFLLLLALKARYPDRMMLIRGNHES 142          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP6_DICDI (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Dictyostelium discoideum GN=ppp6c PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.240e-40
Identity = 73/111 (65.77%), Postives = 92/111 (82.88%), Query Frame = 3
Query:  201 LDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            LD  +E   +CK LPE ++K LC++ + +L+EE NVQPV+ PVT+CGDIHGQFYDL+ELF+ GG  PDTNY+FMGD+VDRGYYS+ET T L+ALK RY D+IT+LRGNHES
Sbjct:    7 LDEWVETARQCKYLPENDLKKLCERVKELLLEESNVQPVRSPVTICGDIHGQFYDLLELFKTGGEVPDTNYVFMGDFVDRGYYSLETFTYLLALKARYPDKITLLRGNHES 117          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP6_RAT (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Rattus norvegicus GN=Ppp6c PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.925e-40
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+ +E   +CK LPE ++K LCD    +L+EE NVQPV  PVTVCGDIHGQFYDL ELFR GG  PDTNY+FMGD+VDRGYYS+ET T L+ALK ++ DRIT+LRGNHES
Sbjct:    5 DLDKYVEIARQCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHES 116          
The following BLAST results are available for this feature:
BLAST of DN617556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PP4CB_DANRE2.393e-4270.94Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP2A1_SCHPO5.331e-4269.91Minor serine/threonine-protein phosphatase PP2A-1 ... [more]
PP4C_DICDI6.962e-4270.54Serine/threonine-protein phosphatase 4 catalytic s... [more]
PPX4_PARTE1.551e-4168.70Serine/threonine-protein phosphatase PP-X homolog ... [more]
PPX3_PARTE1.551e-4168.70Serine/threonine-protein phosphatase PP-X homolog ... [more]
PPX2_ARATH7.698e-4169.64Serine/threonine-protein phosphatase PP-X isozyme ... [more]
PP4C1_CAEBR7.698e-4165.00Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C1_CAEEL1.715e-4064.17Serine/threonine-protein phosphatase 4 catalytic s... [more]
PPP6_DICDI2.240e-4065.77Serine/threonine-protein phosphatase 6 catalytic s... [more]
PPP6_RAT2.925e-4067.86Serine/threonine-protein phosphatase 6 catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617556 ID=DN617556; Name=DN617556; organism=Citrus sinensis; type=EST; length=535bp
AAGAAAAATAATTACCAAGTAATGAGTCAATGATAGAGAGAACAAATTCA
TTCCGATCATCTAAGGGCTTCGTTTTCGTAATCCGCAACCCTATTTCTAA
ACAGTCTATCGATTTTCTAACTATCTAGGATTTCGATCGATCGATCTGTG
GATCTGCTGCGATCTAAACTTAGAGTGAAACGATGCCGTCGCACGGGGAT
CTGGACAGGCAGATCGAGCACTTGATGGAGTGCAAGCCGTTACCGGAGGC
GGAGGTGAAGACACTGTGCGATCAAGCAAGAGCGATTTTGGTGGAGGAGT
GGAACGTGCAGCCGGTCAAGTGTCCGGTCACCGTTTGCGGCGATATTCAC
GGTCAATTTTATGATCTAATCGAGCTCTTTCGCATAGGTGGAAATGCTCC
TGACACTAATTATCTCTTTATGGGTGATTACGTAGATCGGGGTTACTATT
CAGTGGAAACTGTCACACTATTGGTGGCACTGAAAGTTCGATACAGAGAT
AGAATTACAATCCTAAGAGGGAATCATGAGAGTCG
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