DN617556

Overview
NameDN617556
Unique NameDN617556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617556_ssr133 microsatellite DN617556_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5733 contig Csv1_Contig5733:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP6_MOUSE (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Mus musculus GN=Ppp6c PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.925e-40
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+ +E   +CK LPE ++K LCD    +L+EE NVQPV  PVTVCGDIHGQFYDL ELFR GG  PDTNY+FMGD+VDRGYYS+ET T L+ALK ++ DRIT+LRGNHES
Sbjct:    5 DLDKYVEIARQCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHES 116          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A2_YEAST (Serine/threonine-protein phosphatase PP2A-2 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH22 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.925e-40
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 3
Query:  201 LDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            LD+ IEHL +C+PL E +V  LC  A  +L  E NV+P+  PVT+CGD+HGQF+DL+ELF+IGG  PDTNYLFMGDYVDRGYYSVETV+ LVA+KVRY  RITILRGNHES
Sbjct:   78 LDQWIEHLSKCEPLSEDDVARLCKMAVDVLQFEENVKPINVPVTICGDVHGQFHDLLELFKIGGPCPDTNYLFMGDYVDRGYYSVETVSYLVAMKVRYPHRITILRGNHES 188          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A1_YEAST (Serine/threonine-protein phosphatase PP2A-1 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH21 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.925e-40
Identity = 77/111 (69.37%), Postives = 91/111 (81.98%), Query Frame = 3
Query:  201 LDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            LD+ IEHL +C+PL E +V  LC  A  +L  E NV+P+  PVT+CGD+HGQF+DL+ELF+IGG  PDTNYLFMGDYVDRGYYSVETV+ LVA+KVRY  RITILRGNHES
Sbjct:   70 LDQWIEHLSKCEPLSEDDVARLCKMAVDVLQFEENVKPINVPVTICGDVHGQFHDLLELFKIGGPCPDTNYLFMGDYVDRGYYSVETVSYLVAMKVRYPHRITILRGNHES 180          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPE1_SCHPO (Serine/threonine-protein phosphatase ppe1 OS=Schizosaccharomyces pombe GN=ppe1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.989e-40
Identity = 73/112 (65.18%), Postives = 91/112 (81.25%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD  I  + +CK LPE ++K LC+  + IL+EE N+QPV+ PVTVCGDIHGQFYDL+ELFR+GG  P TNY+FMGD+VDRGY+S+ET TL + LK RY D+IT+LRGNHES
Sbjct:    3 DLDEWIATVRKCKYLPEHQLKRLCEMVKVILMEESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPSTNYIFMGDFVDRGYFSLETFTLFMLLKARYPDKITLLRGNHES 114          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP6_HUMAN (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Homo sapiens GN=PPP6C PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.112e-39
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+ +E    CK LPE ++K LCD    +L+EE NVQPV  PVTVCGDIHGQFYDL ELFR GG  PDTNY+FMGD+VDRGYYS+ET T L+ALK ++ DRIT+LRGNHES
Sbjct:    5 DLDKYVEIARLCKYLPENDLKRLCDYVCDLLLEESNVQPVSTPVTVCGDIHGQFYDLCELFRTGGQVPDTNYIFMGDFVDRGYYSLETFTYLLALKAKWPDRITLLRGNHES 116          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C2_CAEEL (Serine/threonine-protein phosphatase 4 catalytic subunit 2 OS=Caenorhabditis elegans GN=pph-4.2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.224e-39
Identity = 74/112 (66.07%), Postives = 92/112 (82.14%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLDRQIE  M C+ + E +VK++C + R IL+EE NVQ +  PVT+CGDIHGQF+DL+ELFR+GG+ P+TNYLF+GDYVDRGY SVET  LL+ LK RY DRIT++RGNHES
Sbjct:   16 DLDRQIEIAMRCELICETQVKSICAKVREILIEEANVQVIDTPVTICGDIHGQFHDLMELFRVGGSPPNTNYLFLGDYVDRGYNSVETFILLMLLKCRYPDRITLIRGNHES 127          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPP6_DROME (Serine/threonine-protein phosphatase 6 catalytic subunit OS=Drosophila melanogaster GN=PpV PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.738e-38
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 3
Query:  195 GDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            GD+D+ IE + +CK LPE E+K LC+    IL+EE N+ PV  PVTVCGDIHGQFYDL +LFR GG  P TNY+FMGD+VDRGYYS+ET T L+ LK RY  RIT+LRGNHE+
Sbjct:    2 GDVDKWIEDVKKCKYLPENELKKLCEMVCDILLEETNILPVSTPVTVCGDIHGQFYDLEQLFRTGGQVPHTNYIFMGDFVDRGYYSLETFTRLLTLKARYPSRITLLRGNHET 114          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2AB_DICDI (Probable serine/threonine-protein phosphatase 2A catalytic subunit B OS=Dictyostelium discoideum GN=DDB_G0283187 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.318e-37
Identity = 68/112 (60.71%), Postives = 91/112 (81.25%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD  IE L +C+ LPE+ +K + D+ + +L+ E NVQ ++ PVTV GD+HGQFYD++E+F+IGG  PDTNYLF+GDYVDRGY+SVET++LL  LK+RY  RIT+LRGNHES
Sbjct:    7 NLDHCIEKLQKCEILPESTIKEITDKMKELLISESNVQEIRSPVTVVGDVHGQFYDVLEIFKIGGQCPDTNYLFLGDYVDRGYHSVETISLLTCLKLRYPSRITLLRGNHES 118          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A3_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 3 OS=Paramecium tetraurelia GN=Ppn3 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.318e-37
Identity = 71/113 (62.83%), Postives = 95/113 (84.07%), Query Frame = 3
Query:  195 GDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            G++DRQI  L + + L E+E+K+LC +A+ IL +E N+  V+ P+T+CGDIHGQF+DLIELF+IGGN PDTNYLF+GDYVDRG  SVET +L+++LKVRY+DRI +LRGNHE+
Sbjct:   13 GNIDRQIAKLKQGQILTESEIKSLCIKAKEILSDEPNIIQVRAPLTICGDIHGQFHDLIELFQIGGNLPDTNYLFLGDYVDRGSQSVETFSLMLSLKVRYKDRIVLLRGNHEN 125          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A2_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 2 OS=Paramecium tetraurelia GN=Ppn2 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.027e-37
Identity = 72/113 (63.72%), Postives = 94/113 (83.19%), Query Frame = 3
Query:  195 GDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            G++DRQI  L + + L E EVK+LC +A+ IL +E N+  V+ P+T+CGDIHGQF+DLIELF+IGGN PDTNYLF+GDYVDRG  SVET +L+++LKVRY+DRI +LRGNHE+
Sbjct:   13 GNIDRQIAKLRQGQILTEQEVKSLCIKAKEILQDEPNIIQVRAPLTICGDIHGQFHDLIELFQIGGNLPDTNYLFLGDYVDRGSQSVETFSLMLSLKVRYKDRIVLLRGNHEN 125          
The following BLAST results are available for this feature:
BLAST of DN617556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPP6_MOUSE2.925e-4067.86Serine/threonine-protein phosphatase 6 catalytic s... [more]
PP2A2_YEAST2.925e-4069.37Serine/threonine-protein phosphatase PP2A-2 cataly... [more]
PP2A1_YEAST2.925e-4069.37Serine/threonine-protein phosphatase PP2A-1 cataly... [more]
PPE1_SCHPO4.989e-4065.18Serine/threonine-protein phosphatase ppe1 OS=Schiz... [more]
PPP6_HUMAN1.112e-3967.86Serine/threonine-protein phosphatase 6 catalytic s... [more]
PP4C2_CAEEL4.224e-3966.07Serine/threonine-protein phosphatase 4 catalytic s... [more]
PPP6_DROME2.738e-3864.60Serine/threonine-protein phosphatase 6 catalytic s... [more]
PP2AB_DICDI2.318e-3760.71Probable serine/threonine-protein phosphatase 2A c... [more]
PP2A3_PARTE2.318e-3762.83Serine/threonine-protein phosphatase PP2A catalyti... [more]
PP2A2_PARTE3.027e-3763.72Serine/threonine-protein phosphatase PP2A catalyti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617556 ID=DN617556; Name=DN617556; organism=Citrus sinensis; type=EST; length=535bp
AAGAAAAATAATTACCAAGTAATGAGTCAATGATAGAGAGAACAAATTCA
TTCCGATCATCTAAGGGCTTCGTTTTCGTAATCCGCAACCCTATTTCTAA
ACAGTCTATCGATTTTCTAACTATCTAGGATTTCGATCGATCGATCTGTG
GATCTGCTGCGATCTAAACTTAGAGTGAAACGATGCCGTCGCACGGGGAT
CTGGACAGGCAGATCGAGCACTTGATGGAGTGCAAGCCGTTACCGGAGGC
GGAGGTGAAGACACTGTGCGATCAAGCAAGAGCGATTTTGGTGGAGGAGT
GGAACGTGCAGCCGGTCAAGTGTCCGGTCACCGTTTGCGGCGATATTCAC
GGTCAATTTTATGATCTAATCGAGCTCTTTCGCATAGGTGGAAATGCTCC
TGACACTAATTATCTCTTTATGGGTGATTACGTAGATCGGGGTTACTATT
CAGTGGAAACTGTCACACTATTGGTGGCACTGAAAGTTCGATACAGAGAT
AGAATTACAATCCTAAGAGGGAATCATGAGAGTCG
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