DN617556

Overview
NameDN617556
Unique NameDN617556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617556_ssr133 microsatellite DN617556_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5733 contig Csv1_Contig5733:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A1_PARTE (Serine/threonine-protein phosphatase PP2A catalytic subunit 1 OS=Paramecium tetraurelia GN=Ppn1 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.027e-37
Identity = 72/113 (63.72%), Postives = 94/113 (83.19%), Query Frame = 3
Query:  195 GDLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            G++DRQI  L + + L E EVK+LC +A+ IL +E N+  V+ P+T+CGDIHGQF+DLIELF+IGGN PDTNYLF+GDYVDRG  SVET +L+++LKVRY+DRI +LRGNHE+
Sbjct:   13 GNIDRQIAKLKQGQILSEQEVKSLCIKAKEILQDEPNIIQVRAPLTICGDIHGQFHDLIELFQIGGNLPDTNYLFLGDYVDRGSQSVETFSLMLSLKVRYKDRIVLLRGNHEN 125          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPX1_PARTE (Serine/threonine-protein phosphatase PP-X homolog 1 OS=Paramecium tetraurelia GN=Ppx1 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 5.709e-36
Identity = 71/112 (63.39%), Postives = 91/112 (81.25%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            D+D+ IE L   + L E +VK LC++A+ IL  E NV  V+ PVT+CGDIHGQFYDL+ELF++GG+ P+TNYLF+GD+VDRGY SVET  LL+ALKVRY D+IT++RGNHES
Sbjct:    3 DIDQWIETLKNGENLKETDVKILCNKAKDILNNEDNVIRVEAPVTICGDIHGQFYDLMELFKVGGDVPETNYLFLGDFVDRGYNSVETFLLLLALKVRYPDQITLIRGNHES 114          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPX2_PARTE (Serine/threonine-protein phosphatase PP-X homolog 2 OS=Paramecium tetraurelia GN=Ppx2 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.833e-35
Identity = 70/112 (62.50%), Postives = 90/112 (80.36%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            D+D+ IE L   + L E +VK LC++A+ IL  E NV  V+ PVT+CGDIHGQF DL+ELF++GG+ P+TNYLF+GD+VDRGY SVET  LL+ALKVRY D+IT++RGNHES
Sbjct:    3 DIDQWIETLKNGENLKETDVKILCNKAKDILNNEDNVIRVEAPVTICGDIHGQFQDLMELFKVGGDVPETNYLFLGDFVDRGYNSVETFLLLLALKVRYPDQITLIRGNHES 114          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP11_YEAST (Serine/threonine-protein phosphatase PP1-1 OS=Saccharomyces cerevisiae GN=SIT4 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.312e-35
Identity = 67/111 (60.36%), Postives = 88/111 (79.28%), Query Frame = 3
Query:  204 DRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAP-DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            D  +E + +C+ L E E+K LC+  + +L+EE N+QPV+ PVTVCGDIHGQF+DL+ELFR  G  P D NY+F+GDYVDRGYYS+ET TLL+ LKV+Y  +IT++RGNHES
Sbjct:    7 DEWLETIKKCQALTENEMKQLCEMVKELLMEESNIQPVQTPVTVCGDIHGQFHDLLELFRTAGGFPDDINYIFLGDYVDRGYYSLETFTLLMCLKVKYPAKITLVRGNHES 117          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: FYPP3_ARATH (Phytochrome-associated serine/threonine protein phosphatase 3 OS=Arabidopsis thaliana GN=FYPP3 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.398e-34
Identity = 67/112 (59.82%), Postives = 87/112 (77.68%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+ I  + + + L E E++ LC+  + IL+EE NVQPV  PVTVCGDIHGQF+DL++LF+ GG+ PDTNY+FMGD+VDRGY S+E  T+L+ LK RY   IT+LRGNHES
Sbjct:    2 DLDQWISKVKDGQHLSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPDTNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHES 113          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: YD44_SCHPO (Putative serine/threonine-protein phosphatase C22H10.04 OS=Schizosaccharomyces pombe GN=SPAC22H10.04 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.343e-34
Identity = 68/112 (60.71%), Postives = 86/112 (76.79%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD  IE L E + + E+ +  LC  A+ +L++E NV  +  P+TV GDIHGQF DL+E+FRIGG  P TNYLF+GDYVDRGYYS+ET+TLL+ LK+RY  RIT+LRGNHES
Sbjct:    3 DLDNIIERLYEKQLIAESVIAYLCSLAKEVLMQESNVVRLSTPITVVGDIHGQFDDLLEIFRIGGPCPYTNYLFLGDYVDRGYYSIETITLLICLKLRYPKRITLLRGNHES 114          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: YOU5_SCHPO (Putative serine/threonine-protein phosphatase C26H8.05c OS=Schizosaccharomyces pombe GN=SPBC26H8.05c PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.114e-34
Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD Q+E L   + +PE+ V  LC + R IL+EE N+Q +  PVT+CGDIHGQ +DL+ELFRIGG+ P T YLF+GD+VDRG+YSVET  LL+ LK +Y   +T++RGNHES
Sbjct:    5 DLDWQLEELENGRLIPESNVVELCQRVRDILIEESNIQWISSPVTICGDIHGQLHDLLELFRIGGSCPGTKYLFLGDFVDRGFYSVETFLLLLTLKCKYPKEMTLIRGNHES 116          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: FYPP_PEA (Phytochrome-associated serine/threonine protein phosphatase OS=Pisum sativum GN=FYPP PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.190e-33
Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+ I  + + + L E E++ LC+  + IL+EE NVQPV  PVTVCGDIHGQF+DL++LF+ GG+ P+TNY+FMGD+VDRGY S+E  T+L+ LK RY   IT+LRGNHES
Sbjct:    2 DLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHES 113          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: FYPP1_ARATH (Phytochrome-associated serine/threonine protein phosphatase 1 OS=Arabidopsis thaliana GN=FYPP1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.652e-33
Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+ I  + + + L E E++ LC+  + IL+EE NVQPV  PVTVCGDIHGQF+DL++LF+ GG+ P+TNY+FMGD+VDRGY S+E  T+L+ LK R+   IT+LRGNHES
Sbjct:    2 DLDQWISKVKDGQHLSEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARHPANITLLRGNHES 113          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP2A4_YEAST (Serine/threonine-protein phosphatase PP2A-like PPG1 OS=Saccharomyces cerevisiae GN=PPG1 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.463e-33
Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            +LD  +E L + + LPE  V+ LC + + +LV+E NV  ++ PVTV GD+HGQF+D++E+F+IGG  PDTNYLF+GDYVDRG YSVET+ LL+ LK+RY  RI +LRGNHES
Sbjct:    2 ELDECLERLYKAQLLPEVTVRALCFKLKEMLVKESNVIHIQTPVTVVGDMHGQFHDMLEIFQIGGPVPDTNYLFLGDYVDRGLYSVETIMLLIVLKLRYPSRIHLLRGNHES 113          
The following BLAST results are available for this feature:
BLAST of DN617556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PP2A1_PARTE3.027e-3763.72Serine/threonine-protein phosphatase PP2A catalyti... [more]
PPX1_PARTE5.709e-3663.39Serine/threonine-protein phosphatase PP-X homolog ... [more]
PPX2_PARTE4.833e-3562.50Serine/threonine-protein phosphatase PP-X homolog ... [more]
PP11_YEAST6.312e-3560.36Serine/threonine-protein phosphatase PP1-1 OS=Sacc... [more]
FYPP3_ARATH2.398e-3459.82Phytochrome-associated serine/threonine protein ph... [more]
YD44_SCHPO5.343e-3460.71Putative serine/threonine-protein phosphatase C22H... [more]
YOU5_SCHPO9.114e-3458.04Putative serine/threonine-protein phosphatase C26H... [more]
FYPP_PEA1.190e-3358.93Phytochrome-associated serine/threonine protein ph... [more]
FYPP1_ARATH2.652e-3358.04Phytochrome-associated serine/threonine protein ph... [more]
PP2A4_YEAST3.463e-3358.04Serine/threonine-protein phosphatase PP2A-like PPG... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617556 ID=DN617556; Name=DN617556; organism=Citrus sinensis; type=EST; length=535bp
AAGAAAAATAATTACCAAGTAATGAGTCAATGATAGAGAGAACAAATTCA
TTCCGATCATCTAAGGGCTTCGTTTTCGTAATCCGCAACCCTATTTCTAA
ACAGTCTATCGATTTTCTAACTATCTAGGATTTCGATCGATCGATCTGTG
GATCTGCTGCGATCTAAACTTAGAGTGAAACGATGCCGTCGCACGGGGAT
CTGGACAGGCAGATCGAGCACTTGATGGAGTGCAAGCCGTTACCGGAGGC
GGAGGTGAAGACACTGTGCGATCAAGCAAGAGCGATTTTGGTGGAGGAGT
GGAACGTGCAGCCGGTCAAGTGTCCGGTCACCGTTTGCGGCGATATTCAC
GGTCAATTTTATGATCTAATCGAGCTCTTTCGCATAGGTGGAAATGCTCC
TGACACTAATTATCTCTTTATGGGTGATTACGTAGATCGGGGTTACTATT
CAGTGGAAACTGTCACACTATTGGTGGCACTGAAAGTTCGATACAGAGAT
AGAATTACAATCCTAAGAGGGAATCATGAGAGTCG
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