DN617556

Overview
NameDN617556
Unique NameDN617556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617556_ssr133 microsatellite DN617556_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5733 contig Csv1_Contig5733:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PPH6_CAEEL (Putative serine/threonine-protein phosphatase pph-6 OS=Caenorhabditis elegans GN=pph-6 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 8.530e-32
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 3
Query:  228 ECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            ECK LPE++   LC      L  E NV PV  PVT+CGDIHGQFYDL+ELF+ GG  P+T Y+FMGDYVDRG+YS+ETVTLL  L ++Y ++IT+LRGNHES
Sbjct:   41 ECKYLPESDAVALCATLIDRLSLEANVVPVSSPVTICGDIHGQFYDLLELFKTGGTVPNTKYVFMGDYVDRGHYSLETVTLLFCLLLKYPNQITLLRGNHES 142          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C_YEAST (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Saccharomyces cerevisiae GN=PPH3 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 9.760e-28
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD+ I  L + K +PE  V  LC  ++ +L+ E NV  V  PVT+CGDIHGQ +DL+ LF   G    T Y+F+GD+VDRG+YS+E+  LL+  K+RY DRIT++RGNHE+
Sbjct:    3 DLDKIIASLRDGKHIPEETVFRLCLNSQELLMNEGNVTQVDTPVTICGDIHGQLHDLLTLFEKSGGVEKTRYIFLGDFVDRGFYSLESFLLLLCYKLRYPDRITLIRGNHET 114          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C_CANGA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Candida glabrata GN=PPH3 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.709e-27
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  198 DLDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            DLD  +  L E + +PE  V  LC  ++ +L+ E NV  V  PVT+CGDIHGQ +DL+ LF   G    T Y+F+GD+VDRG+YS+E+  LL+  K+RY DRIT++RGNHE+
Sbjct:    4 DLDEILVSLKEGRHIPEETVYALCMDSQELLMNESNVARVDTPVTICGDIHGQLHDLLTLFEKSGGVEKTRYVFLGDFVDRGFYSLESFLLLLVYKLRYPDRITLIRGNHET 115          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP18_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 8 OS=Arabidopsis thaliana GN=TOPP8 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 6.326e-27
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 3
Query:  177 ETMPSHGDLDRQIEHLMECK-----PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            E M   G LD  I  L+E K      L E+E++ LC  AR I + + N+  +  P+ +CGDIHGQ+ DL+ LF  GG  P  NYLF+GDYVDRG  S+ET+ LL+A K+RY  +I +LRGNHE
Sbjct:    6 EGMVEKGVLDDIIRRLLEGKGGKQVQLSESEIRQLCFNARQIFLSQPNLLDLHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPSKIYLLRGNHE 128          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP1_NEUCR (Serine/threonine-protein phosphatase PP1 OS=Neurospora crassa GN=ppp-1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.262e-27
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 3
Query:  198 DLDRQIEHLMECK--------PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            DLD  I+ L+E +         L EAE++ LC +AR I + +  +  ++ P+ +CGDIHGQ+YDL+ LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++Y +   ILRGNHE
Sbjct:    8 DLDSIIDRLLEVRGSRPGKQVQLLEAEIRYLCTKAREIFISQPILLELEAPIKICGDIHGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHE 126          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP19_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.079e-26
Identity = 60/123 (48.78%), Postives = 78/123 (63.41%), Query Frame = 3
Query:  177 ETMPSHGDLDRQIEHLMECK-----PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            E M   G LD  I  L+E K      L E E++ LC  AR I + + N+  +  P+ +CGDIHGQ+ DL+ LF  GG  P  NYLF+GDYVDRG  S+ET+ LL+A K+RY  +I +LRGNHE
Sbjct:    6 EGMMEMGVLDDIIRRLLEGKGGKQVQLSEVEIRQLCVNARQIFLSQPNLLELHAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICLLLAYKIRYPSKIFLLRGNHE 128          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP12_YEAST (Serine/threonine-protein phosphatase PP1-2 OS=Saccharomyces cerevisiae GN=GLC7 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.079e-26
Identity = 55/119 (46.22%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  198 DLDRQIEHLMECK--------PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            D+D  I+ L+E +         L E E++ LC +AR+I +++  +  ++ P+ +CGDIHGQ+YDL+ LF  GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++Y +   ILRGNHE
Sbjct:    7 DVDNIIDRLLEVRGSKPGQQVDLEENEIRYLCSKARSIFIKQPILLELEAPIKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFILRGNHE 125          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP1_EMENI (Serine/threonine-protein phosphatase PP1 OS=Emericella nidulans GN=bimG PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.404e-26
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 3
Query:  198 DLDRQIEHLMECK--------PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            DLD  I+ L+E +         L E+E++ LC +AR I + +  +  ++ P+ +CGDIHGQ+YDL+ LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE
Sbjct:    7 DLDSIIDRLLEVRGSRPGKQVQLLESEIRYLCTKAREIFISQPILLELEAPIKICGDIHGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFVLRGNHE 125          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP11_TOBAC (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Nicotiana tabacum GN=NPP1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.995e-26
Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  195 GDLDRQIEHLMECK--------PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            G LD  I  L+E +         L EAE+++LC  +R I +++ N+  +K P+ +CGDIHGQ+ DL+ LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE
Sbjct:   18 GVLDDIINRLLEFRNARTVRQVQLSEAEIRSLCSASREIFLQQPNLLDLKPPIKICGDIHGQYGDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 137          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C_KLULA (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Kluyveromyces lactis GN=PPH3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.135e-26
Identity = 55/111 (49.55%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  201 LDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            LD  IE L + K + E  + +LC  A+ +L+ E NV  V  PVT+CGDIHGQ +DL+ LF   G      Y+F+GD+VDRG+YS+E+  LLV  K+RY DRI ++RGNHE+
Sbjct:    4 LDEIIETLRQGKHVDEDSIYSLCVMAQELLMNESNVTHVDTPVTICGDIHGQLHDLLTLFAKSGGIEKNRYIFLGDFVDRGFYSLESFLLLVCYKLRYPDRIVLIRGNHET 114          
The following BLAST results are available for this feature:
BLAST of DN617556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PPH6_CAEEL8.530e-3262.75Putative serine/threonine-protein phosphatase pph-... [more]
PP4C_YEAST9.760e-2850.89Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP4C_CANGA3.709e-2750.00Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP18_ARATH6.326e-2748.78Serine/threonine-protein phosphatase PP1 isozyme 8... [more]
PP1_NEUCR8.262e-2747.90Serine/threonine-protein phosphatase PP1 OS=Neuros... [more]
PP19_ARATH1.079e-2648.78Serine/threonine-protein phosphatase PP1 isozyme 9... [more]
PP12_YEAST1.079e-2646.22Serine/threonine-protein phosphatase PP1-2 OS=Sacc... [more]
PP1_EMENI2.404e-2646.22Serine/threonine-protein phosphatase PP1 OS=Emeric... [more]
PP11_TOBAC6.995e-2646.67Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
PP4C_KLULA9.135e-2649.55Serine/threonine-protein phosphatase 4 catalytic s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617556 ID=DN617556; Name=DN617556; organism=Citrus sinensis; type=EST; length=535bp
AAGAAAAATAATTACCAAGTAATGAGTCAATGATAGAGAGAACAAATTCA
TTCCGATCATCTAAGGGCTTCGTTTTCGTAATCCGCAACCCTATTTCTAA
ACAGTCTATCGATTTTCTAACTATCTAGGATTTCGATCGATCGATCTGTG
GATCTGCTGCGATCTAAACTTAGAGTGAAACGATGCCGTCGCACGGGGAT
CTGGACAGGCAGATCGAGCACTTGATGGAGTGCAAGCCGTTACCGGAGGC
GGAGGTGAAGACACTGTGCGATCAAGCAAGAGCGATTTTGGTGGAGGAGT
GGAACGTGCAGCCGGTCAAGTGTCCGGTCACCGTTTGCGGCGATATTCAC
GGTCAATTTTATGATCTAATCGAGCTCTTTCGCATAGGTGGAAATGCTCC
TGACACTAATTATCTCTTTATGGGTGATTACGTAGATCGGGGTTACTATT
CAGTGGAAACTGTCACACTATTGGTGGCACTGAAAGTTCGATACAGAGAT
AGAATTACAATCCTAAGAGGGAATCATGAGAGTCG
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