DN617556

Overview
NameDN617556
Unique NameDN617556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617556_ssr133 microsatellite DN617556_ssr133:133..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5733 contig Csv1_Contig5733:1..543. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP1_PHAVU (Serine/threonine-protein phosphatase PP1 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.135e-26
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  201 LDRQIEHLMECK-----PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            LD  I  L+E K      L E+E++ LC  AR I + +  +  ++ P+ VCGDIHGQ+ DL+ LF  GG  P  NYLF+GDYVDRG  S+ET+ LL+A K+RY D+I +LRGNHE
Sbjct:    6 LDDVIRRLLEGKGGKQVQLSESEIRQLCVHARQIFLSQPILLELRAPMRVCGDIHGQYQDLLRLFEYGGYPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHE 120          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP1_MEDVA (Serine/threonine-protein phosphatase PP1 OS=Medicago varia GN=PP1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.135e-26
Identity = 48/97 (49.48%), Postives = 71/97 (73.20%), Query Frame = 3
Query:  240 LPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            L EA+++ LC  A+ I + + N+  ++ P+ +CGD+HGQF DL+ LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++Y++   +LRGNHE
Sbjct:   27 LTEADIRQLCTSAKEIFLSQPNLLELEAPIKICGDVHGQFSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKIKYKENFFLLRGNHE 123          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP11_SCHPO (Serine/threonine-protein phosphatase PP1-1 OS=Schizosaccharomyces pombe GN=dis2 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.135e-26
Identity = 55/119 (46.22%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  198 DLDRQIEHLMECK--------PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            DLD  I+ L+E +         L E E++ LC++AR I + +  +  ++ P+ +CGDIHGQ+YDL+ LF  GG  P+ NYLF+GDYVDRG  S+E + LL+A K++Y +   ILRGNHE
Sbjct:    7 DLDSIIDRLLEVRGSRPGRQVQLSEDEIRFLCNKAREIFISQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLEVICLLLAYKIKYPENFFILRGNHE 125          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP4C_ASHGO (Serine/threonine-protein phosphatase 4 catalytic subunit OS=Ashbya gossypii GN=PPH3 PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.193e-25
Identity = 54/111 (48.65%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  201 LDRQIEHLMECKPLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 533
            LD  IE+L   K +PE  +  LC + + +LV E NV  V  PVT+CGDIHGQ +DL+ LF          ++F+GD+VDRG+YS+E+  LL+  K+RY DRIT++RGNHE+
Sbjct:    6 LDEIIEYLRYSKHIPEETIYELCLKCQELLVNESNVTHVDTPVTICGDIHGQLHDLLTLFEKSEGIEKNRFIFLGDFVDRGFYSLESFLLLLCYKLRYPDRITLIRGNHET 116          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP14_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 4 OS=Arabidopsis thaliana GN=TOPP4 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 3
Query:  198 DLDRQIEHLMECKP-----LPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            D+ R++  +   +P     L EAE+K LC  AR I +++ N+  ++ P+ +CGDIHGQ+ DL+ LF  GG  P  NYLF+GDYVDRG  S+ET+ LL+A K++Y     +LRGNHE
Sbjct:   21 DIIRRLTEVRLARPGKQVQLSEAEIKQLCTTARDIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGFPPSANYLFLGDYVDRGKQSLETICLLLAYKIKYPGNFFLLRGNHE 136          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP13_ARATH (Serine/threonine-protein phosphatase PP1 isozyme 3 OS=Arabidopsis thaliana GN=TOPP3 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 3
Query:  240 LPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            L EAE+K LC  A+ I + + N+  ++ P+ +CGD HGQF DL+ LF  GG  P  NYLF+GDYVDRG  SVET+ LL+A K++Y++   +LRGNHE
Sbjct:   27 LTEAEIKHLCSTAKQIFLTQPNLLELEAPIKICGDTHGQFSDLLRLFEYGGYPPAANYLFLGDYVDRGKQSVETICLLLAYKIKYKENFFLLRGNHE 123          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: PP11_ACECL (Serine/threonine-protein phosphatase PP1 isozyme 1 OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 3
Query:  201 LDRQIEHLMECK--------PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            +D  IE L+E +         L E+E++ LC  ++ IL E+ N+  ++ P+ +CGDIHGQ+ DL+ LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL+A K++Y +   ILRGNHE
Sbjct:    6 VDDVIERLLEVRNNRPGKQVQLTESEIRLLCLTSKEILSEQPNLLELEAPIKICGDIHGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFILRGNHE 123          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEEL (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis elegans GN=gsp-2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25
Identity = 53/119 (44.54%), Postives = 80/119 (67.23%), Query Frame = 3
Query:  198 DLDRQIEHLMECK--------PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            +LD  I  L+E +         L E+E+K LC ++R I + +  +  ++ P+ +CGD+HGQ+YDL+ LF  GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE
Sbjct:    7 NLDNIISRLLEVRGSKPGKNVQLTESEIKGLCQKSREIFLSQPILLELEAPLKICGDVHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 125          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: GLC7B_CAEBR (Serine/threonine-protein phosphatase PP1-beta OS=Caenorhabditis briggsae GN=gsp-2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25
Identity = 53/119 (44.54%), Postives = 80/119 (67.23%), Query Frame = 3
Query:  198 DLDRQIEHLMECK--------PLPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            +LD  I  L+E +         L E+E+K LC ++R I + +  +  ++ P+ +CGD+HGQ+YDL+ LF  GG  P++NYLF+GDYVDRG  S+ET+ LL+A K++Y +   +LRGNHE
Sbjct:    7 NLDNIISRLLEVRGSKPGKNVQLTESEIKGLCQKSREIFLSQPILLELEAPLKICGDVHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 125          
BLAST of DN617556 vs. ExPASy Swiss-Prot
Match: GLC7A_CAEEL (Serine/threonine-protein phosphatase PP1-alpha OS=Caenorhabditis elegans GN=gsp-1 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.035e-25
Identity = 58/126 (46.03%), Postives = 83/126 (65.87%), Query Frame = 3
Query:  183 MPSHGDL--DRQIEHLME---CKP-----LPEAEVKTLCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 530
            M + GDL  D  I  L+E   C+P     + EAE++ LC ++R I + +  +  ++ P+ +CGDIHGQ+ DL+ LF  GG  P+ NYLF+GDYVDRG  S+ET+ LL+A KV+Y +   +LRGNHE
Sbjct:    1 MSNDGDLNIDNLITRLLEVRGCRPGKPVTMSEAEIRALCHKSREIFLSQPILLELEAPLKICGDIHGQYNDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKVKYPENFFLLRGNHE 126          
The following BLAST results are available for this feature:
BLAST of DN617556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 188
Match NameE-valueIdentityDescription
PP1_PHAVU9.135e-2650.43Serine/threonine-protein phosphatase PP1 OS=Phaseo... [more]
PP1_MEDVA9.135e-2649.48Serine/threonine-protein phosphatase PP1 OS=Medica... [more]
PP11_SCHPO9.135e-2646.22Serine/threonine-protein phosphatase PP1-1 OS=Schi... [more]
PP4C_ASHGO1.193e-2548.65Serine/threonine-protein phosphatase 4 catalytic s... [more]
PP14_ARATH2.035e-2546.55Serine/threonine-protein phosphatase PP1 isozyme 4... [more]
PP13_ARATH2.035e-2552.58Serine/threonine-protein phosphatase PP1 isozyme 3... [more]
PP11_ACECL2.035e-2546.61Serine/threonine-protein phosphatase PP1 isozyme 1... [more]
GLC7B_CAEEL2.035e-2544.54Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
GLC7B_CAEBR2.035e-2544.54Serine/threonine-protein phosphatase PP1-beta OS=C... [more]
GLC7A_CAEEL2.035e-2546.03Serine/threonine-protein phosphatase PP1-alpha OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617556 ID=DN617556; Name=DN617556; organism=Citrus sinensis; type=EST; length=535bp
AAGAAAAATAATTACCAAGTAATGAGTCAATGATAGAGAGAACAAATTCA
TTCCGATCATCTAAGGGCTTCGTTTTCGTAATCCGCAACCCTATTTCTAA
ACAGTCTATCGATTTTCTAACTATCTAGGATTTCGATCGATCGATCTGTG
GATCTGCTGCGATCTAAACTTAGAGTGAAACGATGCCGTCGCACGGGGAT
CTGGACAGGCAGATCGAGCACTTGATGGAGTGCAAGCCGTTACCGGAGGC
GGAGGTGAAGACACTGTGCGATCAAGCAAGAGCGATTTTGGTGGAGGAGT
GGAACGTGCAGCCGGTCAAGTGTCCGGTCACCGTTTGCGGCGATATTCAC
GGTCAATTTTATGATCTAATCGAGCTCTTTCGCATAGGTGGAAATGCTCC
TGACACTAATTATCTCTTTATGGGTGATTACGTAGATCGGGGTTACTATT
CAGTGGAAACTGTCACACTATTGGTGGCACTGAAAGTTCGATACAGAGAT
AGAATTACAATCCTAAGAGGGAATCATGAGAGTCG
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