DN617554

Overview
NameDN617554
Unique NameDN617554
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617554_ssr602 microsatellite DN617554_ssr602:602..613. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9148 contig Csv1_Contig9148:31..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.587e-16
Identity = 37/75 (49.33%), Postives = 55/75 (73.33%), Query Frame = -3
Query:  416 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPS-TAGGEGCDNMTMIIV 637
            D+ + +L  D +F+VLACDGIWD M++Q++VDF+ E+L  +    ++CE +L RCLAP    GG GCDNMT+++V
Sbjct:  210 DVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVREKLAEKRDPQSICEELLTRCLAPDCQMGGLGCDNMTVVLV 284          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.730e-15
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = -3
Query:  410 DDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAP-STAGGEGCDNMTMIIVQF 610
            DD+F++LACDGIWDC SSQQ+V+F+   + +   +  +CE +++RC+A  S + G GCDNMT+ IV F
Sbjct:  224 DDEFLILACDGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASNSESCGIGCDNMTICIVAF 291          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = -3
Query:  404 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 637
            D+    L  +D+F+V+ACDGIW+ M SQQ+VDF+ + L   S  + VC+ + + CLA ST G G GCDNMT+I   F +
Sbjct:  410 DVKIEALTPEDEFIVVACDGIWNSMESQQVVDFVRDLLAKGSSCAEVCDALCDACLADSTDGDGTGCDNMTVICTTFDR 488          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = -3
Query:  416 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPST-AGGEGCDNMTMIIV 637
            D+   E+ DDD+FVVLACDGIWDC +SQQ+++F+   + + + +  + E +++ C+A  T   G GCDNMT+ IV
Sbjct:  212 DVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIV 286          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PP2C2_YEAST (Protein phosphatase 2C homolog 2 OS=Saccharomyces cerevisiae GN=PTC2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.066e-14
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = -3
Query:  404 DDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 613
            D D+FV+LACDGIWDC++SQ  VD +H  L     ++ +  R+++ C AP+T G G GCDNM++++V   K
Sbjct:  224 DRDEFVILACDGIWDCLTSQDCVDLVHLGLREGKTLNEISSRIIDVCCAPTTEGTGIGCDNMSIVVVALLK 294          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PP2C3_YEAST (Protein phosphatase 2C homolog 3 OS=Saccharomyces cerevisiae GN=PTC3 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 7.552e-13
Identity = 33/72 (45.83%), Postives = 50/72 (69.44%), Query Frame = -3
Query:  404 DDDDFVVLACDGIWDCMSSQQLVDFIHEQL-HSESKISAVCERVLERCLAPSTAG-GEGCDNMTMIIVQFKK 613
            D+D+FV+LACDGIWDC++SQ+ VD +H  +      +S +  R+++ C +P+T G G GCDNM++ IV   K
Sbjct:  224 DEDEFVILACDGIWDCLTSQECVDLVHYGISQGNMTLSDISSRIVDVCCSPTTEGSGIGCDNMSISIVALLK 295          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 28/77 (36.36%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  407 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 637
            D+   +L   D F+++ CDG+++    QQ+++FI+ +L +   +    E++L++ LA  T+ G GCDNMT I++QFK
Sbjct:  219 DVKVTQLSAADKFLLMGCDGVFETWDHQQILNFINSELKNTQNLQKAAEKLLDQLLAKDTSLGTGCDNMTCILIQFK 295          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 28/77 (36.36%), Postives = 50/77 (64.94%), Query Frame = -3
Query:  407 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFK 637
            D+   +L   D F+++ CDG+++    QQ+++F++++L S   +    E++L++ LA  T+ G GCDNMT I+V FK
Sbjct:  219 DVKVTQLTASDKFLLMGCDGVFETWDHQQILNFVNQELKSSQNLQKATEKLLDQLLAKDTSLGTGCDNMTCILVLFK 295          
BLAST of DN617554 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 29/79 (36.71%), Postives = 53/79 (67.09%), Query Frame = -3
Query:  401 DINSVELCDDDDFVVLACDGIWDCMSSQQLVDFIHEQLHSESKISAVCERVLERCLAPSTAGGEGCDNMTMIIVQFKKP 637
            +I + +L DD +F+V+ACDG+WD +++Q +VDF+   L++  ++S +CE +L+  +   T      DNM++I+V+F  P
Sbjct:  249 EIRADQLTDDTEFLVIACDGVWDVLANQAVVDFVRLHLNNGVELSVICESLLQEAI---TRDPPSTDNMSVILVRFLHP 324          
The following BLAST results are available for this feature:
BLAST of DN617554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PP2C2_CAEEL5.587e-1649.33Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]
PP2C2_SCHPO4.730e-1550.00Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
PP2C1_CAEEL1.054e-1446.84Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]
PP2C3_SCHPO2.347e-1445.33Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
PP2C2_YEAST3.066e-1446.48Protein phosphatase 2C homolog 2 OS=Saccharomyces ... [more]
PP2C3_YEAST7.552e-1345.83Protein phosphatase 2C homolog 3 OS=Saccharomyces ... [more]
PP2C6_PARTE2.429e-1136.36Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
PP2C5_PARTE2.429e-1136.36Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
P2C42_ORYSJ7.068e-1136.71Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617554 ID=DN617554; Name=DN617554; organism=Citrus sinensis; type=EST; length=639bp
CCCCCCCTTTTTTTTTTGTTAACACACATCAAATAAACAAACGAGAGATT
GCTATGCTTGATGCACTTCAAAAACTTGTACATGTCGAAAGTTCTAATAG
TGGTTTTGTCAAAGCTAAAAGCACACATGAACATGAACAAATGAATTTTG
TAAACATTTCATTTATTTTTTCTTTTTTCTCAGTGCTGGACCATCTACAA
GTACACACGTCTTTGATCCCAATTTTTCAACGAAAGGGATTCTTGCATTG
TCTTATGGGCAAAGGAACCAGAATCGTGCAGCCTGACATAGTGGTACATT
ACAGCGGCTACTTTGATTCACTTTCCTCGGGTAGTGGACTTGAGTCATCT
GATTTGAATTCCAAGGACTGTTGACTAGAAGTGGAGGAAGTGGACTGGAT
TGGTTTCTTGAACTGCACTATGATCATGGTCATGTTGTCACATCCCTCAC
CTCCAGCTGTTGATGGCGCCAAACATCTCTCGAGTACTCTCTCGCACACA
GCAGAAATCTTGCTTTCCGAATGTAGTTGTTCATGAATAAAATCTACTAA
TTGCTGGCTTGACATGCAATCCCAGATTCCATCACACGCCAGCACAACGA
AATCATCATCATCACACAGCTCAACAGAGTTTATATCTG
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