DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5178 contig Csv1_Contig5178:67..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_THETN (30S ribosomal protein S13 OS=Thermoanaerobacter tengcongensis GN=rpsM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YGIGRSR+ +IL    +  +   ++LT  E++ LRE + + Y    DLR+ +  +++RL+DI CYRGIRH  GLP RGQRT TNARTRKG R  +  KKK
Sbjct:    3 RIAGVDLPRDKRVEIALTYIYGIGRSRSKEILAKAGVNPDTRVRDLTEDEVSKLREIIEKEYKVEGDLRKEVAMNIKRLIDIGCYRGIRHKLGLPVRGQRTRTNARTRKGPRKTVAKKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRAW (30S ribosomal protein S13 OS=Streptomyces avermitilis GN=rpsM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = -3 
Query:  103 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKP 459
            RV   +IP +KR+E +L +V+GIGR+ + + L +  +  N   ++L+  EL  +RE V + + T  DLRR ++ D+ R V+I CY+G+RH +GLP  GQRTSTNARTRKG R AI GKKKP
Sbjct:    3 RVSGVDIPREKRVEVALTYVFGIGRTLSQKTLAETGVNPNTRVRDLSEEELVRIREYVDNNFKTEGDLRREVQADIRRKVEIGCYQGLRHRRGLPVHGQRTSTNARTRKGPRRAIAGKKKP 123
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCUA (30S ribosomal protein S13 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YG+GR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGVGRTRSNEILAATGIDRNLRTRDLTDDQLTHLRDYIEANLKIEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCPA (30S ribosomal protein S13 OS=Mycobacterium paratuberculosis GN=rpsM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YG+GR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGVGRTRSNEILAATGIDRDLRTRDLTDDQLTHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCMM (30S ribosomal protein S13 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rpsM PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YG+GR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGVGRTRSNEILAATGIDRNLRTRDLTDDQLTHLRDYIEANLKIEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCA1 (30S ribosomal protein S13 OS=Mycobacterium avium (strain 104) GN=rpsM PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 57/120 (47.50%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YG+GR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGVGRTRSNEILAATGIDRDLRTRDLTDDQLTHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCS2 (30S ribosomal protein S13 OS=Mycobacterium smegmatis GN=rpsM PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.109e-24
Identity = 58/120 (48.33%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YGIGR+R+++IL    I  N  TK+LT  ++  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGIGRTRSNEILAATGIDKNMRTKDLTDDQVTVLRDYIEGNLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOSM (30S ribosomal protein S13 OS=Geobacter sp. (strain M21) GN=rpsM PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.109e-24
Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGRS + +IL    +  N     LT  E+  +RE + + +  E DLRR I   ++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG    + GKKK
Sbjct:    3 RIAGVDLPRNKRIEIALTYIYGIGRSLSQEILTAAGVDMNTRCDNLTEAEVTKIREYIDKNVKVEGDLRRDISMSIKRLMDLGCYRGLRHRKGLPCRGQRTKTNARTRKGPARTVAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOBB (30S ribosomal protein S13 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rpsM PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.109e-24
Identity = 56/120 (46.67%), Postives = 79/120 (65.83%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGRS + +IL    +  N     LT  E+  +RE + + +  E DLRR I   ++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG    + GKKK
Sbjct:    3 RIAGVDLPRNKRIEIALTYIYGIGRSLSQEILTAAGVDMNTRCDNLTEAEVTKIREYIDKNVKVEGDLRRDISMSIKRLMDLGCYRGLRHRKGLPCRGQRTKTNARTRKGPARTVAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCLE (30S ribosomal protein S13 OS=Mycobacterium leprae GN=rpsM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YGIGR+RA++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEVALTYIYGIGRTRANEILEATGIERDLRTRDLTDDQLTHLRDYIEANLKVEGDLRREVQADIRRKMEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_THETN8.494e-2547.5030S ribosomal protein S13 OS=Thermoanaerobacter te... [more]
RS13_STRAW8.494e-2548.7630S ribosomal protein S13 OS=Streptomyces avermiti... [more]
RS13_MYCUA8.494e-2547.5030S ribosomal protein S13 OS=Mycobacterium ulceran... [more]
RS13_MYCPA8.494e-2547.5030S ribosomal protein S13 OS=Mycobacterium paratub... [more]
RS13_MYCMM8.494e-2547.5030S ribosomal protein S13 OS=Mycobacterium marinum... [more]
RS13_MYCA18.494e-2547.5030S ribosomal protein S13 OS=Mycobacterium avium (... [more]
RS13_MYCS21.109e-2448.3330S ribosomal protein S13 OS=Mycobacterium smegmat... [more]
RS13_GEOSM1.109e-2446.6730S ribosomal protein S13 OS=Geobacter sp. (strain... [more]
RS13_GEOBB1.109e-2446.6730S ribosomal protein S13 OS=Geobacter bemidjiensi... [more]
RS13_MYCLE1.449e-2449.1730S ribosomal protein S13 OS=Mycobacterium leprae ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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