DN617553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCLB (30S ribosomal protein S13 OS=Mycobacterium leprae (strain Br4923) GN=rpsM PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24 Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E +L ++YGIGR+RA++IL I L T++LT +L LR+ + L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK Sbjct: 3 RLVGVDLPRDKRMEVALTYIYGIGRTRANEILEATGIERDLRTRDLTDDQLTHLRDYIEANLKVEGDLRREVQADIRRKMEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_HERAR (30S ribosomal protein S13 OS=Herminiimonas arsenicoxydans GN=rpsM PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24 Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLN--IGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +PN + L +YGIGR RA +I CD + K K+L EL LR+E+++++ DLRR I +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG R A KK Sbjct: 3 RIAGVNVPNHQHTVIGLTAIYGIGRPRAQKI-CDATGVLTTKKVKDLDDSELEKLRDEIAKFIVEGDLRREISMNIKRLMDLGCYRGMRHRKGLPCRGQRTRTNARTRKGPRKAAQSLKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_AQUAE (30S ribosomal protein S13 OS=Aquifex aeolicus GN=rpsM PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24 Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++PN+KRLE +L ++YGIG SRA +I I K ELT ELN+LR+ + Y DLRR ++ ++++L D+ CYRGIRH++GLP RGQ+T TNARTRKGKR + G KK Sbjct: 3 RIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDELNTLRKFIDENYKVEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRGQQTRTNARTRKGKRKTVGGTKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOUR (30S ribosomal protein S13 OS=Geobacter uraniireducens (strain Rf4) GN=rpsM PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24 Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P +KR+E +L ++YGIGRS A +IL D + N + LT E+ +RE + + + E DLRR I +++RL+D+ CYRG+RH +GLP GQRT TNARTRKG + GKKK Sbjct: 3 RIAGIDLPRNKRIEIALTYIYGIGRSTAQKILADAGVDSNTRSDNLTESEIARIRENIDKNVKVEGDLRRDISMNIKRLMDLGCYRGLRHRKGLPVHGQRTKTNARTRKGPARTVAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_CLONN (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24 Identity = 56/119 (47.06%), Postives = 83/119 (69.75%), Query Frame = -3 Query: 109 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 459 R+ ++P +KR+E L ++YGIG +R+ +IL + + + K+L+ E+N++R+ + + E DLRR I D++RLV+I CYRGIRH +GLP RGQ+T TNARTRKG + AI GKK Sbjct: 3 RIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGKNFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ONYPE (30S ribosomal protein S13 OS=Onion yellows phytoplasma GN=rpsM PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24 Identity = 55/119 (46.22%), Postives = 82/119 (68.91%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IP+DKR+ +L ++YG+G +H+IL +LNI + K LT +L++LR E+++Y DLRR + +++RL++I YRG+RH +GLP RGQ+T NA T KGK AI GKKK Sbjct: 3 RIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCSS (30S ribosomal protein S13 OS=Mycobacterium sp. (strain MCS) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24 Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E +L ++YG+GR+R+ +IL I L TK+LT ++ LR+ + L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK Sbjct: 3 RLVGVDLPRDKRMEIALTYIYGVGRTRSQEILEATGIDRDLRTKDLTDDQVTQLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCSK (30S ribosomal protein S13 OS=Mycobacterium sp. (strain KMS) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24 Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E +L ++YG+GR+R+ +IL I L TK+LT ++ LR+ + L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK Sbjct: 3 RLVGVDLPRDKRMEIALTYIYGVGRTRSQEILEATGIDRDLRTKDLTDDQVTQLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCSJ (30S ribosomal protein S13 OS=Mycobacterium sp. (strain JLS) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24 Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E +L ++YG+GR+R+ +IL I L TK+LT ++ LR+ + L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK Sbjct: 3 RLVGVDLPRDKRMEIALTYIYGVGRTRSQEILEATGIDRDLRTKDLTDDQVTQLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCA9 (30S ribosomal protein S13 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24 Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E +L ++YGIGR+R+ +IL I + +K+LT ++ LRE + L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK Sbjct: 3 RLVGVDLPRDKRMEIALTYIYGIGRTRSKEILAATGISPEQRSKDLTDDQVTQLREYIEATLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122 The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bpback to top |