DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5178 contig Csv1_Contig5178:67..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCLB (30S ribosomal protein S13 OS=Mycobacterium leprae (strain Br4923) GN=rpsM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24
Identity = 59/120 (49.17%), Postives = 83/120 (69.17%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YGIGR+RA++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEVALTYIYGIGRTRANEILEATGIERDLRTRDLTDDQLTHLRDYIEANLKVEGDLRREVQADIRRKMEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_HERAR (30S ribosomal protein S13 OS=Herminiimonas arsenicoxydans GN=rpsM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLN--IGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    +PN +     L  +YGIGR RA +I CD    +  K  K+L   EL  LR+E+++++   DLRR I  +++RL+D+ CYRG+RH +GLPCRGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNVPNHQHTVIGLTAIYGIGRPRAQKI-CDATGVLTTKKVKDLDDSELEKLRDEIAKFIVEGDLRREISMNIKRLMDLGCYRGMRHRKGLPCRGQRTRTNARTRKGPRKAAQSLKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_AQUAE (30S ribosomal protein S13 OS=Aquifex aeolicus GN=rpsM PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++PN+KRLE +L ++YGIG SRA +I     I   K   ELT  ELN+LR+ +   Y    DLRR ++ ++++L D+ CYRGIRH++GLP RGQ+T TNARTRKGKR  + G KK
Sbjct:    3 RIAGVDLPNNKRLEVALTYIYGIGWSRAREICEKTGIPCTKRVGELTPDELNTLRKFIDENYKVEGDLRREVQLNIKKLKDMGCYRGIRHARGLPVRGQQTRTNARTRKGKRKTVGGTKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOUR (30S ribosomal protein S13 OS=Geobacter uraniireducens (strain Rf4) GN=rpsM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24
Identity = 56/120 (46.67%), Postives = 80/120 (66.67%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNI-GNKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGRS A +IL D  +  N  +  LT  E+  +RE + + +  E DLRR I  +++RL+D+ CYRG+RH +GLP  GQRT TNARTRKG    + GKKK
Sbjct:    3 RIAGIDLPRNKRIEIALTYIYGIGRSTAQKILADAGVDSNTRSDNLTESEIARIRENIDKNVKVEGDLRRDISMNIKRLMDLGCYRGLRHRKGLPVHGQRTKTNARTRKGPARTVAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_CLONN (30S ribosomal protein S13 OS=Clostridium novyi (strain NT) GN=rpsM PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24
Identity = 56/119 (47.06%), Postives = 83/119 (69.75%), Query Frame = -3
Query:  109 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKK 459
            R+   ++P +KR+E  L ++YGIG +R+ +IL +  +  +   K+L+  E+N++R+ + +    E DLRR I  D++RLV+I CYRGIRH +GLP RGQ+T TNARTRKG + AI GKK
Sbjct:    3 RIAGIDLPKEKRVEVGLTYIYGIGINRSREILKETGVNPDTRVKDLSEEEVNTIRDYIGKNFVIEGDLRRTIALDIKRLVEIGCYRGIRHRRGLPVRGQKTKTNARTRKGPKRAISGKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ONYPE (30S ribosomal protein S13 OS=Onion yellows phytoplasma GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 55/119 (46.22%), Postives = 82/119 (68.91%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IP+DKR+  +L ++YG+G   +H+IL +LNI   +  K LT  +L++LR E+++Y    DLRR +  +++RL++I  YRG+RH +GLP RGQ+T  NA T KGK  AI GKKK
Sbjct:    3 RIAGIDIPSDKRVVIALTYIYGLGNKLSHKILNELNIDQNIRVKNLTEQQLSALRSEITKYNVEGDLRREVTLNIKRLMEIGAYRGLRHRKGLPVRGQKTRNNAHTVKGKPKAIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCSS (30S ribosomal protein S13 OS=Mycobacterium sp. (strain MCS) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YG+GR+R+ +IL    I   L TK+LT  ++  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGVGRTRSQEILEATGIDRDLRTKDLTDDQVTQLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCSK (30S ribosomal protein S13 OS=Mycobacterium sp. (strain KMS) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YG+GR+R+ +IL    I   L TK+LT  ++  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGVGRTRSQEILEATGIDRDLRTKDLTDDQVTQLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCSJ (30S ribosomal protein S13 OS=Mycobacterium sp. (strain JLS) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YG+GR+R+ +IL    I   L TK+LT  ++  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGVGRTRSQEILEATGIDRDLRTKDLTDDQVTQLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCA9 (30S ribosomal protein S13 OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YGIGR+R+ +IL    I   + +K+LT  ++  LRE +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEIALTYIYGIGRTRSKEILAATGISPEQRSKDLTDDQVTQLREYIEATLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122          
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_MYCLB1.449e-2449.1730S ribosomal protein S13 OS=Mycobacterium leprae ... [more]
RS13_HERAR1.449e-2447.5030S ribosomal protein S13 OS=Herminiimonas arsenic... [more]
RS13_AQUAE1.449e-2450.0030S ribosomal protein S13 OS=Aquifex aeolicus GN=r... [more]
RS13_GEOUR1.892e-2446.6730S ribosomal protein S13 OS=Geobacter uraniireduc... [more]
RS13_CLONN1.892e-2447.0630S ribosomal protein S13 OS=Clostridium novyi (st... [more]
RS13_ONYPE2.471e-2446.2230S ribosomal protein S13 OS=Onion yellows phytopl... [more]
RS13_MYCSS2.471e-2447.5030S ribosomal protein S13 OS=Mycobacterium sp. (st... [more]
RS13_MYCSK2.471e-2447.5030S ribosomal protein S13 OS=Mycobacterium sp. (st... [more]
RS13_MYCSJ2.471e-2447.5030S ribosomal protein S13 OS=Mycobacterium sp. (st... [more]
RS13_MYCA92.471e-2447.5030S ribosomal protein S13 OS=Mycobacterium abscess... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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