DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5178 contig Csv1_Contig5178:67..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GLUOX (30S ribosomal protein S13 OS=Gluconobacter oxydans GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 63/123 (51.22%), Postives = 81/123 (65.85%), Query Frame = -3 
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+    IP +KR+  +L++VYGIG S A  I   L I + K   EL+  E+  +RE +   L  E DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKGK VAI GKKK TR
Sbjct:    3 RIAGVNIPTNKRVVIALRYVYGIGPSTAQSICNKLEIPDAKRVNELSDDEIVKIRELIDSELRVEGDLRRETAMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGKAVAIAGKKKVTR 125
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GLOVI (30S ribosomal protein S13 OS=Gloeobacter violaceus GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 60/120 (50.00%), Postives = 80/120 (66.67%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IP +KR+E +L +++GIG SRA QIL    I   L  +ELT V+++ LREE+  +Y    DLRR    +++RL+DI C RG RH  GLP RGQRT TNARTR+G R  + GKKK
Sbjct:    3 RIAGVDIPREKRVEIALTYIFGIGPSRATQILLSTGINPNLRVRELTDVQVSLLREEIEQKYQVEGDLRRFENINIKRLMDIGCLRGRRHRLGLPVRGQRTRTNARTRRGGRKTVAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURTA (30S ribosomal protein S13 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURPS (30S ribosomal protein S13 OS=Burkholderia pseudomallei GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURP6 (30S ribosomal protein S13 OS=Burkholderia pseudomallei (strain 668) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURP1 (30S ribosomal protein S13 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURP0 (30S ribosomal protein S13 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURMS (30S ribosomal protein S13 OS=Burkholderia mallei (strain SAVP1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURMA (30S ribosomal protein S13 OS=Burkholderia mallei GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURM9 (30S ribosomal protein S13 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_GLUOX2.471e-2451.2230S ribosomal protein S13 OS=Gluconobacter oxydans... [more]
RS13_GLOVI2.471e-2450.0030S ribosomal protein S13 OS=Gloeobacter violaceus... [more]
RS13_BURTA2.471e-2447.0630S ribosomal protein S13 OS=Burkholderia thailand... [more]
RS13_BURPS2.471e-2447.0630S ribosomal protein S13 OS=Burkholderia pseudoma... [more]
RS13_BURP62.471e-2447.0630S ribosomal protein S13 OS=Burkholderia pseudoma... [more]
RS13_BURP12.471e-2447.0630S ribosomal protein S13 OS=Burkholderia pseudoma... [more]
RS13_BURP02.471e-2447.0630S ribosomal protein S13 OS=Burkholderia pseudoma... [more]
RS13_BURMS2.471e-2447.0630S ribosomal protein S13 OS=Burkholderia mallei (... [more]
RS13_BURMA2.471e-2447.0630S ribosomal protein S13 OS=Burkholderia mallei G... [more]
RS13_BURM92.471e-2447.0630S ribosomal protein S13 OS=Burkholderia mallei (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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