DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5178 contig Csv1_Contig5178:67..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURM7 (30S ribosomal protein S13 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+RA  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PELPD (30S ribosomal protein S13 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+  +L ++YGIG S A +IL   N+  N  T  LT  +++ LR+E+ R +  E DLRR I  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG    + GKKK
Sbjct:    3 RIAGIDLPKNKRIVIALTYIYGIGNSTAEKILEATNVDPNTRTDNLTEADVSHLRDEIDRNIKVEGDLRREISMNIKRLMDLGCYRGLRHRKGLPVRGQRTKTNARTRKGPARTVAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ORITI (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 57/123 (46.34%), Postives = 82/123 (66.67%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+ N  +P +KR+   L ++YGIGRS A +I  ++ +  NK  K+L+  EL +LR  + S+Y    DLRR I  ++++  DI+CY G+RH + LP RGQ T +NARTRKGK +AI GKKKP +
Sbjct:    3 RISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKPNK 125          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ORITB (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 57/123 (46.34%), Postives = 82/123 (66.67%), Query Frame = -3
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+ N  +P +KR+   L ++YGIGRS A +I  ++ +  NK  K+L+  EL +LR  + S+Y    DLRR I  ++++  DI+CY G+RH + LP RGQ T +NARTRKGK +AI GKKKP +
Sbjct:    3 RISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKPNK 125          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_NITMU (30S ribosomal protein S13 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 53/115 (46.09%), Postives = 80/115 (69.57%), Query Frame = -3
Query:  121 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQIL--CDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 459
            R+    IPN +  E +L  +YGIGR+RA +I     +N+  K+ K++T  E++ LR+ V++++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A+
Sbjct:    3 RIAGVNIPNHQHAEIALTAIYGIGRARAREICEAAGINVSTKM-KDVTDAEMDKLRDNVAKFVVEGDLRREVSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAV 116          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCVP (30S ribosomal protein S13 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YGIGR+R+ +IL    I   + TK+LT  ++  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLMGVDLPRDKRMEIALTYIYGIGRTRSQEILEATGISRDMRTKDLTDDQVTQLRDYIEGNLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_HALOH (30S ribosomal protein S13 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = -3
Query:  121 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 459
            R+   ++P +KR+E  L ++YGIGRS +++IL    I  +   K+LT  E+  LREEV +Y    DLRR I+ +++RL+DI CYRGIRH + LP RGQRT TNARTRKG +  +
Sbjct:    3 RIAGVDLPRNKRVEIGLTYIYGIGRSTSNKILKVTGIDPDTRVKDLTEAEIAKLREEVDKYQVEGDLRREIRANIKRLMDIGCYRGIRHRKNLPVRGQRTRTNARTRKGPKKTV 116          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOSW (30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IP DKR+  SL ++YGIG+S A +IL +  +      ++LT  EL  +RE V R     DLRR +  +++RL++I CYRGIRH +GLP RGQ T  NARTRKG R  +  KKK
Sbjct:    3 RIAGVDIPRDKRVVISLTYIYGIGKSTAKKILAEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLIEIGCYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_FINM2 (30S ribosomal protein S13 OS=Finegoldia magna (strain ATCC 29328) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = -3
Query:  130 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 459
            R+   ++PNDKR+E  L  +YGIGR  +++IL  L I  +   K+LT  EL+ +R E+  YLT  DLRR +  +++RL +I CYRG RH +GLP RGQ T  NARTRKG R
Sbjct:    3 RIQGVDLPNDKRVEIGLTAIYGIGRQSSNKILAKLGINPDTRVKDLTESELSDIRNELDNYLTEGDLRRDVAMNIKRLKEINCYRGSRHKKGLPVRGQHTKNNARTRKGPR 113          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_CYAP4 (30S ribosomal protein S13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E  L ++YGIG +R+  IL +  +  +   +ELT  ++++LR  V  Y    DLRR    +++RL DI CYRG RH  GLP RGQRT TNARTR+G R  + GKKK
Sbjct:    3 RIAGVDLPRDKRVEIGLTYIYGIGLTRSQHILAETGVNPDTRIRELTDADISALRTAVEAYQVEGDLRRLENMNIKRLQDIGCYRGRRHRMGLPVRGQRTRTNARTRRGGRRTVAGKKK 121          
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BURM72.471e-2447.0630S ribosomal protein S13 OS=Burkholderia mallei (... [more]
RS13_PELPD3.228e-2447.5030S ribosomal protein S13 OS=Pelobacter propionicu... [more]
RS13_ORITI3.228e-2446.3430S ribosomal protein S13 OS=Orientia tsutsugamush... [more]
RS13_ORITB3.228e-2446.3430S ribosomal protein S13 OS=Orientia tsutsugamush... [more]
RS13_NITMU3.228e-2446.0930S ribosomal protein S13 OS=Nitrosospira multifor... [more]
RS13_MYCVP3.228e-2447.5030S ribosomal protein S13 OS=Mycobacterium vanbaal... [more]
RS13_HALOH3.228e-2449.1230S ribosomal protein S13 OS=Halothermothrix oreni... [more]
RS13_GEOSW3.228e-2447.0630S ribosomal protein S13 OS=Geobacillus sp. (stra... [more]
RS13_FINM23.228e-2449.5530S ribosomal protein S13 OS=Finegoldia magna (str... [more]
RS13_CYAP43.228e-2446.2230S ribosomal protein S13 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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