DN617553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURM7 (30S ribosomal protein S13 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24 Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ IPN + E L ++GIGR+RA I + +K K+LT +L LREEV +++ DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A KK Sbjct: 3 RIAGVNIPNHQHTEIGLTAIFGIGRTRARSICVASGVAFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQALKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PELPD (30S ribosomal protein S13 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 57/120 (47.50%), Postives = 81/120 (67.50%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P +KR+ +L ++YGIG S A +IL N+ N T LT +++ LR+E+ R + E DLRR I +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG + GKKK Sbjct: 3 RIAGIDLPKNKRIVIALTYIYGIGNSTAEKILEATNVDPNTRTDNLTEADVSHLRDEIDRNIKVEGDLRREISMNIKRLMDLGCYRGLRHRKGLPVRGQRTKTNARTRKGPARTVAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ORITI (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 57/123 (46.34%), Postives = 82/123 (66.67%), Query Frame = -3 Query: 97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459 R+ N +P +KR+ L ++YGIGRS A +I ++ + NK K+L+ EL +LR + S+Y DLRR I ++++ DI+CY G+RH + LP RGQ T +NARTRKGK +AI GKKKP + Sbjct: 3 RISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKPNK 125
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_ORITB (30S ribosomal protein S13 OS=Orientia tsutsugamushi (strain Boryong) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 57/123 (46.34%), Postives = 82/123 (66.67%), Query Frame = -3 Query: 97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEV-SRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459 R+ N +P +KR+ L ++YGIGRS A +I ++ + NK K+L+ EL +LR + S+Y DLRR I ++++ DI+CY G+RH + LP RGQ T +NARTRKGK +AI GKKKP + Sbjct: 3 RISNVNVPTNKRVMIGLTYIYGIGRSTAQKICQEVQVSVNKKVKDLSNQELVALRSIIESKYKVEGDLRREINLNIKKKKDIRCYEGLRHIRKLPVRGQNTHSNARTRKGKAIAIAGKKKPNK 125
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_NITMU (30S ribosomal protein S13 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 53/115 (46.09%), Postives = 80/115 (69.57%), Query Frame = -3 Query: 121 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQIL--CDLNIGNKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 459 R+ IPN + E +L +YGIGR+RA +I +N+ K+ K++T E++ LR+ V++++ DLRR + +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A+ Sbjct: 3 RIAGVNIPNHQHAEIALTAIYGIGRARAREICEAAGINVSTKM-KDVTDAEMDKLRDNVAKFVVEGDLRREVSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAV 116
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCVP (30S ribosomal protein S13 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 57/120 (47.50%), Postives = 82/120 (68.33%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E +L ++YGIGR+R+ +IL I + TK+LT ++ LR+ + L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK Sbjct: 3 RLMGVDLPRDKRMEIALTYIYGIGRTRSQEILEATGISRDMRTKDLTDDQVTQLRDYIEGNLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_HALOH (30S ribosomal protein S13 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 56/114 (49.12%), Postives = 78/114 (68.42%), Query Frame = -3 Query: 121 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAI 459 R+ ++P +KR+E L ++YGIGRS +++IL I + K+LT E+ LREEV +Y DLRR I+ +++RL+DI CYRGIRH + LP RGQRT TNARTRKG + + Sbjct: 3 RIAGVDLPRNKRVEIGLTYIYGIGRSTSNKILKVTGIDPDTRVKDLTEAEIAKLREEVDKYQVEGDLRREIRANIKRLMDIGCYRGIRHRKNLPVRGQRTRTNARTRKGPKKTV 116
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_GEOSW (30S ribosomal protein S13 OS=Geobacillus sp. (strain WCH70) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IP DKR+ SL ++YGIG+S A +IL + + ++LT EL +RE V R DLRR + +++RL++I CYRGIRH +GLP RGQ T NARTRKG R + KKK Sbjct: 3 RIAGVDIPRDKRVVISLTYIYGIGKSTAKKILAEAGVSEDTRVRDLTEEELGRIREIVGRLKVEGDLRREVSLNIKRLIEIGCYRGIRHRRGLPVRGQNTKNNARTRKGPRRTVANKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_FINM2 (30S ribosomal protein S13 OS=Finegoldia magna (strain ATCC 29328) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = -3 Query: 130 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKR 459 R+ ++PNDKR+E L +YGIGR +++IL L I + K+LT EL+ +R E+ YLT DLRR + +++RL +I CYRG RH +GLP RGQ T NARTRKG R Sbjct: 3 RIQGVDLPNDKRVEIGLTAIYGIGRQSSNKILAKLGINPDTRVKDLTESELSDIRNELDNYLTEGDLRRDVAMNIKRLKEINCYRGSRHKKGLPVRGQHTKNNARTRKGPR 113
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_CYAP4 (30S ribosomal protein S13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E L ++YGIG +R+ IL + + + +ELT ++++LR V Y DLRR +++RL DI CYRG RH GLP RGQRT TNARTR+G R + GKKK Sbjct: 3 RIAGVDLPRDKRVEIGLTYIYGIGLTRSQHILAETGVNPDTRIRELTDADISALRTAVEAYQVEGDLRRLENMNIKRLQDIGCYRGRRHRMGLPVRGQRTRTNARTRRGGRRTVAGKKK 121 The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bpback to top |