DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5178 contig Csv1_Contig5178:67..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURP8 (30S ribosomal protein S13 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpsM PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24
Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  +YGIGR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR    +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIYGIGRTRSRDICVAAGVAFSKKVKDLTDADLEKLREEVGKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_SYNAS (30S ribosomal protein S13 OS=Syntrophus aciditrophicus (strain SB) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24
Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGR++A +IL    I  +  T EL   E+N++R  + R +    DLRR I   ++RL+D+  YRG+RH +GLP RGQRT TNARTRKG R AI GKKK
Sbjct:    3 RIAGVDLPKNKRMEIALTYIYGIGRTKAKEILEKAEISFDTKTDELADSEINAIRTIIDRDHKVEGDLRRDISMSIKRLMDVGAYRGLRHRKGLPVRGQRTHTNARTRKGPRRAIAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PELCD (30S ribosomal protein S13 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24
Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P +KR+E +L ++YGIGRS +  IL    +  N  T ELT  E   +R+ +   +  E DLRR +  +++RL+D+ CYRG+RH +GLP RGQ+T TNARTRKG R  + GK+K
Sbjct:    3 RIAGIDLPRNKRIEVALTYIYGIGRSSSQDILQKAGVDPNTRTDELTEAEAGQIRDIIDGQMQVEGDLRRVVTGNIKRLMDLGCYRGLRHRRGLPVRGQKTKTNARTRKGPRKTVAGKRK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCGI (30S ribosomal protein S13 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24
Identity = 56/120 (46.67%), Postives = 84/120 (70.00%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L ++YG+GR+R+ +IL    I  ++ TK+LT  +++ LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLMGVDLPRDKRMEIALTYIYGVGRTRSQEILEATGISRDQRTKDLTDDQVSQLRDYIEGNLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPZ (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPM (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M28 GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPG (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPF (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPD (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPC (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121          
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_BURP83.228e-2447.0630S ribosomal protein S13 OS=Burkholderia phymatum... [more]
RS13_SYNAS4.216e-2448.3330S ribosomal protein S13 OS=Syntrophus aciditroph... [more]
RS13_PELCD4.216e-2445.0030S ribosomal protein S13 OS=Pelobacter carbinolic... [more]
RS13_MYCGI4.216e-2446.6730S ribosomal protein S13 OS=Mycobacterium gilvum ... [more]
RS13_STRPZ5.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPM5.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPG5.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPF5.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPD5.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRPC5.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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