DN617553
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURP8 (30S ribosomal protein S13 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rpsM PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.228e-24 Identity = 56/119 (47.06%), Postives = 75/119 (63.03%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ IPN + E L +YGIGR+R+ I + +K K+LT +L LREEV +++ DLRR +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A KK Sbjct: 3 RIAGVNIPNHQHTEIGLTAIYGIGRTRSRDICVAAGVAFSKKVKDLTDADLEKLREEVGKFIVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRRAAQSLKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_SYNAS (30S ribosomal protein S13 OS=Syntrophus aciditrophicus (strain SB) GN=rpsM PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24 Identity = 58/120 (48.33%), Postives = 81/120 (67.50%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P +KR+E +L ++YGIGR++A +IL I + T EL E+N++R + R + DLRR I ++RL+D+ YRG+RH +GLP RGQRT TNARTRKG R AI GKKK Sbjct: 3 RIAGVDLPKNKRMEIALTYIYGIGRTKAKEILEKAEISFDTKTDELADSEINAIRTIIDRDHKVEGDLRRDISMSIKRLMDVGAYRGLRHRKGLPVRGQRTHTNARTRKGPRRAIAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_PELCD (30S ribosomal protein S13 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsM PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24 Identity = 54/120 (45.00%), Postives = 79/120 (65.83%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P +KR+E +L ++YGIGRS + IL + N T ELT E +R+ + + E DLRR + +++RL+D+ CYRG+RH +GLP RGQ+T TNARTRKG R + GK+K Sbjct: 3 RIAGIDLPRNKRIEVALTYIYGIGRSSSQDILQKAGVDPNTRTDELTEAEAGQIRDIIDGQMQVEGDLRRVVTGNIKRLMDLGCYRGLRHRRGLPVRGQKTKTNARTRKGPRKTVAGKRK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCGI (30S ribosomal protein S13 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rpsM PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24 Identity = 56/120 (46.67%), Postives = 84/120 (70.00%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ ++P DKR+E +L ++YG+GR+R+ +IL I ++ TK+LT +++ LR+ + L E DLRR ++ D+ R ++I CY+G+RH +GLP RGQRT TNARTRKG + I GKKK Sbjct: 3 RLMGVDLPRDKRMEIALTYIYGVGRTRSQEILEATGISRDQRTKDLTDDQVSQLRDYIEGNLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGLPVRGQRTKTNARTRKGPKRTIAGKKK 122
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPZ (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24 Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPM (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M28 GN=rpsM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24 Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPG (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24 Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPF (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24 Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPD (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24 Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPC (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsM PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24 Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 Query: 106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459 R+ +IPNDKR+ SL +VYGIG + + +IL I + K+LT + +++R EV DLRR + +++RL++I YRGIRH +GLP RGQ T NARTRKGK VAI GKKK Sbjct: 3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121 The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bpback to top |