DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5178 contig Csv1_Contig5178:67..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRPB (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRP8 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M18 GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRP6 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M6 GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRP3 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M3 GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRP1 (30S ribosomal protein S13 OS=Streptococcus pyogenes serotype M1 GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 58/119 (48.74%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG + + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLATSKKILAAAGISEDIRVKDLTSDQEDAIRREVDAIKVEGDLRREVNMNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRA5 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype V GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG S + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRA3 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype III GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG S + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_STRA1 (30S ribosomal protein S13 OS=Streptococcus agalactiae serotype Ia GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   +IPNDKR+  SL +VYGIG S + +IL    I   +  K+LT  + +++R EV       DLRR +  +++RL++I  YRGIRH +GLP RGQ T  NARTRKGK VAI GKKK
Sbjct:    3 RIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVDAIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCTU (30S ribosomal protein S13 OS=Mycobacterium tuberculosis GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L +++GIGR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +G+P RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCTA (30S ribosomal protein S13 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L +++GIGR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +G+P RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKK 122
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_STRPB5.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP85.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP65.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP35.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRP15.506e-2448.7430S ribosomal protein S13 OS=Streptococcus pyogene... [more]
RS13_STRA55.506e-2449.5830S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_STRA35.506e-2449.5830S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_STRA15.506e-2449.5830S ribosomal protein S13 OS=Streptococcus agalact... [more]
RS13_MYCTU5.506e-2446.6730S ribosomal protein S13 OS=Mycobacterium tubercu... [more]
RS13_MYCTA5.506e-2446.6730S ribosomal protein S13 OS=Mycobacterium tubercu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
back to top