DN617553

Overview
NameDN617553
Unique NameDN617553
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5178 contig Csv1_Contig5178:67..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCBT (30S ribosomal protein S13 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L +++GIGR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +G+P RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCBP (30S ribosomal protein S13 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L +++GIGR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +G+P RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_MYCBO (30S ribosomal protein S13 OS=Mycobacterium bovis GN=rpsM PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 56/120 (46.67%), Postives = 83/120 (69.17%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGNKL-TKELTGVELNSLREEVSRYLTGE-DLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+   ++P DKR+E +L +++GIGR+R+++IL    I   L T++LT  +L  LR+ +   L  E DLRR ++ D+ R ++I CY+G+RH +G+P RGQRT TNARTRKG +  I GKKK
Sbjct:    3 RLVGVDLPRDKRMEVALTYIFGIGRTRSNEILAATGIDRDLRTRDLTEEQLIHLRDYIEANLKVEGDLRREVQADIRRKIEIGCYQGLRHRRGMPVRGQRTKTNARTRKGPKRTIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_METSB (30S ribosomal protein S13 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 57/120 (47.50%), Postives = 80/120 (66.67%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIGN-KLTKELTGVELNSLREEVSR-YLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IP +KR+  +LQ+++GIG  +A +I   +NI + +   ELT  E+  +RE + R YL   DLRR +  +++RL+D+ CYRG+RH + LP RGQRT TNARTRKGK   I GKKK
Sbjct:    3 RIAGVNIPTNKRVVIALQYIHGIGSKKAEEICAKVNIPDARRVSELTDAEVLQIRETIDRDYLVEGDLRREVAINIKRLMDLGCYRGLRHRRQLPVRGQRTHTNARTRKGKAKPIAGKKK 122
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURVG (30S ribosomal protein S13 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICSAAGVEFSKKVKDLTDADLEKLREEVGKFIVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURM1 (30S ribosomal protein S13 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURCM (30S ribosomal protein S13 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICSAAGVEFSKKVKDLTDADLEKLREEVGKFIVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURCJ (30S ribosomal protein S13 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICVAAGVDFSKKVKDLTDADLEKLREEVGKFVVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_BURA4 (30S ribosomal protein S13 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 55/119 (46.22%), Postives = 76/119 (63.87%), Query Frame = -3 
Query:  106 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVSRYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKK 459
            R+    IPN +  E  L  ++GIGR+R+  I     +  +K  K+LT  +L  LREEV +++   DLRR +  +++RL+D+ CYRG+RH +GLP RGQRT TNARTRKG R A    KK
Sbjct:    3 RIAGVNIPNHQHTEIGLTAIFGIGRTRSRSICSAAGVEFSKKVKDLTDADLEKLREEVGKFIVEGDLRREVTMNIKRLMDLGCYRGVRHRKGLPMRGQRTRTNARTRKGPRRAAQALKK 121
[Close]
BLAST of DN617553 vs. ExPASy Swiss-Prot
Match: RS13_SYNP2 (30S ribosomal protein S13 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsM PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 58/123 (47.15%), Postives = 80/123 (65.04%), Query Frame = -3 
Query:   97 RVGNTEIPNDKRLETSLQHVYGIGRSRAHQILCDLNIG-NKLTKELTGVELNSLREEVS-RYLTGEDLRRCIKNDVERLVDIQCYRGIRHSQGLPCRGQRTSTNARTRKGKRVAIPGKKKPTR 459
            R+   ++P DKR+E +L +VYGIG SRA +I+ +  +  +   ++L+  +   LR  V+  Y    DLRR    +++RLVDI  YRG RH QGLP RGQRT TNARTR+G+RV + GKKK  R
Sbjct:    3 RIAGVDLPRDKRIEIALTYVYGIGLSRAQEIIANTGVNPDTRVRDLSDEDALKLRSYVTDNYQVEGDLRRLESMNIKRLVDIGTYRGRRHRQGLPVRGQRTRTNARTRRGRRVTVAGKKKAPR 125
The following BLAST results are available for this feature:
BLAST of DN617553 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS13_MYCBT5.506e-2446.6730S ribosomal protein S13 OS=Mycobacterium bovis (... [more]
RS13_MYCBP5.506e-2446.6730S ribosomal protein S13 OS=Mycobacterium bovis (... [more]
RS13_MYCBO5.506e-2446.6730S ribosomal protein S13 OS=Mycobacterium bovis G... [more]
RS13_METSB5.506e-2447.5030S ribosomal protein S13 OS=Methylocella silvestr... [more]
RS13_BURVG5.506e-2446.2230S ribosomal protein S13 OS=Burkholderia vietnami... [more]
RS13_BURM15.506e-2446.2230S ribosomal protein S13 OS=Burkholderia multivor... [more]
RS13_BURCM5.506e-2446.2230S ribosomal protein S13 OS=Burkholderia ambifari... [more]
RS13_BURCJ5.506e-2446.2230S ribosomal protein S13 OS=Burkholderia cepacia ... [more]
RS13_BURA45.506e-2446.2230S ribosomal protein S13 OS=Burkholderia ambifari... [more]
RS13_SYNP27.191e-2447.1530S ribosomal protein S13 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617553 ID=DN617553; Name=DN617553; organism=Citrus sinensis; type=EST; length=557bp
TTTTTTTTTTTTTTTTAATTTGTCCTAAAACTTATTTGTATCAAAAAAAT
AATTCACAATATTCTGATATGTCACAAACAACAGCCAATAAGTTTAACGA
GTGGGTTTCTTCTTCCCTGGAATTGCAACTCTTTTACCCTTACGGGTCCT
AGCATTGGTGCTGGTTCGCTGTCCTCGGCAAGGCAACCCCTGACTATGTC
TAATACCTCTGTAGCATTGGATGTCAACCAATCTCTCTACATCATTTTTA
ATGCATCGCCTCAAATCTTCTCCAGTCAAGTATCTGGAAACTTCCTCACG
AAGAGAATTGAGTTCCACTCCAGTTAGTTCCTTGGTGAGTTTGTTCCCAA
TGTTTAGGTCACAGAGAATTTGGTGAGCCCTTGAGCGCCCAATTCCATAA
ACATGCTGTAGAGAGGTTTCAAGTCTCTTGTCATTTGGAATCTCTGTGTT
TCCCACACGAAGACCTTGTACGCGTAGACCATGAAACTGCAGAATACAAT
ATGACACTAATGGTTTGTTTCAACCATATTCCTCCACTAGGTATCAATGC
AAATATA
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