DN617551

Overview
NameDN617551
Unique NameDN617551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:122..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.392e-25
Identity = 62/157 (39.49%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   49 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYAT 519
            + +GH  EA+ PD  R  L E + T +FVF G G+ M  +  T  G+                         +ISGGHVNPAVT    VGG+++L R  LY  AQ+L S+ AC LL+++T G  T   AL+ GVG    VV E V TF L++ +YAT
Sbjct:    4 LTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLATPVHALAEGVGPLQGVVAEAVFTFSLLFVIYAT 159          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 5.298e-23
Identity = 62/163 (38.04%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   31 IMPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYAT 519
            ++P+  + +GH  EA  P  LRA   E + T +FVF G  S +   K    GA   +                     ++SGGH+NPAVT    VGG+I+L R  LY  AQL GS++ACLLL+ +T G  T   AL+ GVG    V  E V TF L+  + AT
Sbjct:    3 LLPMTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAATPVHALADGVGPVQGVAAEAVFTFTLLLVICAT 164          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 1.305e-21
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   82 PDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVY 513
            P ALRA  AEF ST +FVF   GS ++   LT +  +  S                     ++SGGHVNPAVTF   +GG+I++   I YW +Q+LGST ACL+L +++ GQ      ++  +  + A + E V+TF +VYTV+
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAGQAVPTTRIAVEMTGFGAGILEGVLTFMVVYTVH 157          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.958e-21
Identity = 56/151 (37.09%), Postives = 78/151 (51.66%), Query Frame = 1
Query:   70 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYAT 519
            E      +RA LAE + T +FVF G  + MA       GA  P +                     ++SGGH+NPAVT      G+I+  R  LY  AQLL S++AC+LL+++T G  T    L SG+G    +V EI++TF L++ VYAT
Sbjct:   12 EVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMATPVHTLGSGIGPMQGLVMEIILTFSLLFVVYAT 162          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.443e-20
Identity = 56/152 (36.84%), Postives = 82/152 (53.95%), Query Frame = 1
Query:   70 EATHPDA--LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYA 516
            EA  PD   +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S++AC+LL++++ G  T   AL +G+     +V E+++TF L++  YA
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVTPVHALGAGIRPMQGLVMEVILTFSLLFVTYA 167          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.198e-20
Identity = 53/143 (37.06%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   91 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYA 516
            +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S+ AC+LL+F++ G  T   AL  G+     +V E+++TF L++  YA
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVTPVHALGRGISPMQGLVMEVILTFSLLFVTYA 165          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.553e-19
Identity = 53/146 (36.30%), Postives = 74/146 (50.68%), Query Frame = 1
Query:   85 DALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATA 522
            +ALR  ++EFIST  FV A  GS M+  KL     + P                      N+SGGHVNPAVTF   V G IS+   + YW +Q++ S +ACL+LK     Q    + ++  +  + A V E V+ F LVYTV+  +
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLKVTVMEQHVPIYKIAGEMTGFGASVLEGVLAFVLVYTVFTAS 165          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.929e-18
Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 1
Query:   34 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTH-NGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVY 513
            M   N+ V   R  + P +LR+ LAEFIST +FVF   GS ++   LT  +  ++                       ++SGGHVNPAVTF   +GG I +   + YW +QLLG+T ACL L   + G+      ++  +  +   V E V+TF LVYTV+
Sbjct:    1 MASNNLLVDLKRCFSAP-SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAGEEVPTTRIAVAMTGFGGAVLEGVLTFLLVYTVH 160          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.668e-14
Identity = 49/148 (33.11%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   94 RAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP----SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTTSAF---ALSSGVGAWNAVVFEIVMTFGLVYTVYA 516
            RA +AEF++ ++FVF   G+ + FN      AN                            ++SG H+NPAVT G  +   IS+L+ ++Y IAQ LG+ VA  +L  +T+G   ++     LS GV A   +  EI++TF LV  V A
Sbjct:   12 RAVIAEFLAMILFVFISIGAALGFNFPIEEKANQTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGITSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVA 159          
BLAST of DN617551 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13
Identity = 56/168 (33.33%), Postives = 76/168 (45.24%), Query Frame = 1
Query:   37 PIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTH----NGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT----NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYA 516
            P++   V   RE       RA +AEFI+TL+F++    + + F   T      GA                          ISGGH+NPAVTFG F+   +SL+R + Y +AQ LG+T    L+K       N     A  LS G      V  EI+ TF LVYTV++
Sbjct:   22 PVKTFEV---RELKKWSFYRAVIAEFIATLLFLYVTVLTVIGFKSQTDINAGGGACASVGLLGISWAFGGMIFILVYCTAGISGGHINPAVTFGLFLASKVSLVRAVSYMVAQCLGATCGVGLVKVFQSTYYNRYGGGANMLSDGYNVGVGVGAEIIGTFVLVYTVFS 186          
The following BLAST results are available for this feature:
BLAST of DN617551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
TIP43_MAIZE7.392e-2539.49Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP42_ORYSJ5.298e-2338.04Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]
TIP51_ORYSJ1.305e-2138.19Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP41_ORYSJ4.958e-2137.09Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP42_MAIZE1.443e-2036.84Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP41_MAIZE4.198e-2037.06Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP51_ARATH3.553e-1936.30Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP51_MAIZE3.929e-1835.40Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
AQPA_RANES7.668e-1433.11Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
PIP26_ARATH2.231e-1333.33Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617551 ID=DN617551; Name=DN617551; organism=Citrus sinensis; type=EST; length=523bp
CAAAGGTTCAATCTTCATCGTTTGATCTCCATCATGCCGATCAGAAACAT
TGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAG
CCCTAGCAGAGTTCATCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGC
TCGGGCATGGCCTTCAACAAGCTCACTCACAACGGCGCCAACACCCCCTC
CGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTG
TCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTAATCCTGCTGTCACC
TTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTACGAGGCATCCTCTA
CTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGT
TCGTTACCAACGGCCAGACCACATCTGCTTTTGCTCTCTCATCTGGAGTT
GGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATGACATTCGGACTAGT
GTACACAGTGTATGCCACAGCCC
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