DN617550

Overview
NameDN617550
Unique NameDN617550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:575..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 4.788e-38
Identity = 77/107 (71.96%), Postives = 87/107 (81.31%), Query Frame = -1
Query:  210 VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 530
            VVFEIV+TF LVYTVYATA DPKKGSLGTIAPIAIGFIVGANILA G F G SMNPA SFGPA+ +  +  +WVYWVGPLIGGGLAG+VY   FI  S++Q+   +Y
Sbjct:  143 VVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAGNWVYWVGPLIGGGLAGLVYGDVFIGGSYQQVADQDY 249          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.253e-38
Identity = 66/106 (62.26%), Postives = 84/106 (79.25%), Query Frame = -1
Query:  222 WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLP 539
            W+AV+ E VMTFGL+Y  YAT +DPK+G +GTIAP+A+GF++GAN+LAGG FDGA MNPA  FGPALV W W +HWVYW+GP +G GLAG+VYE+  I  +   +P
Sbjct:  146 WHAVLLEAVMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFLGAGLAGLVYEYLVIPSADAAVP 251          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.253e-38
Identity = 75/107 (70.09%), Postives = 87/107 (81.31%), Query Frame = -1
Query:  210 VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 530
            VVFE+V+TF LVYTVYATA DPKKGSLGTIAPIAIGFIVGANILA G F G SMNPA SFGPA+ +  +  +WVYWVGPL+GGGLAG+VY   FI  S++Q+   +Y
Sbjct:  142 VVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGDFAGNWVYWVGPLVGGGLAGLVYGDVFIGGSYQQVADQDY 248          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = -1
Query:  231 NAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHE 536
            + ++ EI++TF LVY VY+TA+DPK+GS+G IAP+AIG IVGANIL GG FDGASMNPA +FGPALV W W NHW+YWVGP IGG LA ++YE+  I   +E
Sbjct:  151 HGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWRWSNHWIYWVGPFIGGALAALIYEYMIIPSVNE 252          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 6.913e-37
Identity = 75/109 (68.81%), Postives = 85/109 (77.98%), Query Frame = -1
Query:  213 WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTE 539
            +  VV EI++TF LVYTVYATA DPKKGSLGTIAPIAIGFIVGANILA G F G SMNPA SFGPA+V+  +  +W+YW GPLIGGGLAG +Y   FI   H  LPT+E
Sbjct:  140 FQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIG-CHTPLPTSE 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.029e-37
Identity = 75/106 (70.75%), Postives = 84/106 (79.25%), Query Frame = -1
Query:  213 VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTE 530
            VV EI++TF LVYTVYATA DPKKGSLGTIAPIAIGFIVGANILA G F G SMNPA SFGPA+V+  +  +W+YW GPLIGGGLAG +Y   FI   H  LPT+E
Sbjct:  143 VVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFIG-CHTPLPTSE 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = -1
Query:  210 NAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFI------NQSHEQLPTTEY 536
            +AV+ E VMTFG VY  YAT +DPK+G LGTIAP+A+GF++GAN+LAGG FDGA MNPA  FGPALV W W +HWVYW+GP +G GLAG+VYE+  I        +H+ L   +Y
Sbjct:  152 HAVLLEAVMTFGFVYAYYATVVDPKRGHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFLGAGLAGLVYEYLLIPPADAVPHTHQPLAPEDY 266          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = -1
Query:  246 WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFI 539
            W+AV+ E  MTFGL+Y  YAT +DPK+G +GTIAP+A+GF++GAN+LAGG FDGA MNPA  FGPALV W W +HWVYW+GP +G GLAG++YE+  I
Sbjct:  147 WHAVLLEATMTFGLMYAYYATVIDPKRGHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALVGWRWRHHWVYWLGPFVGAGLAGLLYEYLVI 244          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.540e-36
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = -1
Query:  213 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTE 542
            A   VV EIV+TF LVYTVYATA DPKKGSLGTIAPIAIGFIVGANILA G F G SMNPA SFGPA+VS  +   W+YWVGPL+GG LAG++Y   FI  S+   PTTE
Sbjct:  139 AIEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLVGGALAGLIYGDVFIG-SYAPAPTTE 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.481e-36
Identity = 67/99 (67.68%), Postives = 82/99 (82.83%), Query Frame = -1
Query:  234 VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSH 530
            +++EI++TF L++TVYAT +DPKKGSL    P+  GF+VGANILAGGAF GASMNPA SFGPALVS +W +HWVYWVGPLIGGGLAG +YE   I++ H
Sbjct:  139 IIWEIILTFSLLFTVYATIVDPKKGSLDGFGPLLTGFVVGANILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVLIDRPH 237          
The following BLAST results are available for this feature:
BLAST of DN617550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
TIP22_MAIZE4.788e-3871.96Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP31_MAIZE6.253e-3862.26Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP21_MAIZE6.253e-3870.09Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP32_ARATH4.053e-3764.71Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP2_TOBAC6.913e-3768.81Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC9.029e-3770.75Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP32_MAIZE1.540e-3659.13Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP31_ORYSJ1.540e-3664.29Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP22_ARATH1.540e-3670.00Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP41_ARATH4.481e-3667.68Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617550 ID=DN617550; Name=DN617550; organism=Citrus sinensis; type=EST; length=542bp
AAGCAATTTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCA
TAATTATCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATC
AACGGCCATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGT
AAAAGCAAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCT
TTTAGCTTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGA
AGAAGAACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCG
ACCCAGTAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCC
GAATGACACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCA
AGATGTTGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCC
AAGCTTCCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAG
TCCGAATGTCATCACGATCTCGAAAACGACTGCGTTCCATGC
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