DN617550

Overview
NameDN617550
Unique NameDN617550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:575..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQPA_DICDI (Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.715e-11
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = -1
Query:  261 AVVFEIVMTFGLVYTVYATAL-DPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVY 533
            A + E+++T  L   V  T++ +     L  IAP AIG  +   +  G  F G ++NP    GP+++S  W +HWVYW+GP++G  LA  +Y
Sbjct:  158 AFLMEMMLTSILCLCVLGTSVFNVWDRRLNRIAPFAIGLALFIGVAIGFNFSGGALNPVRVLGPSIISGVWSHHWVYWLGPIVGAILAAFIY 249          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP24_ORYSJ (Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica GN=PIP2-4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 38/95 (40.00%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  258 EIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 521
            EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V   + +W + W++WVGP IG  +A + ++
Sbjct:  176 EIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGVAVVYNNNKAWSDQWIFWVGPFIGAAIAALYHQ 269          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = -1
Query:  258 EIVMTFGLVYTVYATALDPKKGSLGT----IAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 521
            EIV TF LVYTV++ A D K+ +  +    +AP+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP IG  LA I ++
Sbjct:  182 EIVGTFILVYTVFS-ATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQ 275          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: NIP14_ORYSJ (Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica GN=NIP1-4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = -1
Query:  261 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVY 533
            ++V E V+TF L++ + A A D +  ++G +A +A+G  +  N+L  G   GASMNPA S GPALV   +   WVY +GP  G       Y
Sbjct:  174 SLVIEFVITFYLMFVIMAVATDDQ--AVGHMAGVAVGGTIMLNVLFAGPVSGASMNPARSIGPALVGSKYTALWVYILGPFAGAAAGAWAY 262          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP28_ORYSJ (Probable aquaporin PIP2-8 OS=Oryza sativa subsp. japonica GN=PIP2-8 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.989e-11
Identity = 42/116 (36.21%), Postives = 62/116 (53.45%), Query Frame = -1
Query:  210 VVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV-----SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 530
            VV E+V TF LVYTV++ A DPK+ +    +  +AP+ IG  V    LA     G  +NPA S GPALV     + +W + W++WVGP  G   A I + +     + +   ++ Y
Sbjct:  161 VVAEMVGTFVLVYTVFS-ATDPKRKARDSHVPVLAPLPIGLAVLVVHLATIPITGTGINPARSLGPALVLGLGTTKAWSHLWIFWVGPFAGAAAAMIYHHYILRGAAAKAFASSSY 275          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 OS=Oryza sativa subsp. japonica GN=PIP2-7 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  225 AWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQL 542
            A  A+  EIV TF LVYTV++ A DPK+ +    +  + P+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP+IG  LA   ++     ++ + L
Sbjct:  169 AAGALGAEIVGTFILVYTVFS-ATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGEAAKAL 280          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: NIP51_ARATH (Probable aquaporin NIP5-1 OS=Arabidopsis thaliana GN=NIP5-1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = -1
Query:  237 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS 533
            A   E ++TF L++ V A A D +  ++G +A IA+G  V  NIL  G   G SMNP  + GPA+ S ++ + WVY V P +G      VY    +N S
Sbjct:  195 AFALEFIITFILLFVVTAVATDTR--AVGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVASGNYRSLWVYLVAPTLGAISGAAVYTGVKLNDS 291          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: NIP22_ORYSJ (Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica GN=NIP2-2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.516e-11
Identity = 33/95 (34.74%), Postives = 55/95 (57.89%), Query Frame = -1
Query:  255 WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 539
            W+A+V EIV+TF +++   A A D +  ++G +A +A+G  V    +  G   G SMNPA +  PA+ S  +   W+Y++GP++G      VY +
Sbjct:  167 WHALVIEIVVTFNMMFVTCAVATDSR--AVGELAGLAVGSAVCITSIFAGPVSGGSMNPARTLAPAVASNVYTGLWIYFLGPVVGTLSGAWVYTY 259          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: NIP31_ARATH (Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.510e-11
Identity = 36/81 (44.44%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  285 VFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIG 527
            V E + TF L++ + A A D  K + G+ A IAIG  +  +IL  G   GASMNPA S GPAL+   + + W+Y V P+IG
Sbjct:  170 VMEFIATFNLMFVISAVATD--KRATGSFAGIAIGATIVLDILFSGPISGASMNPARSLGPALIWGCYKDLWLYIVSPVIG 248          
The following BLAST results are available for this feature:
BLAST of DN617550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
AQPA_DICDI1.715e-1135.87Aquaporin A OS=Dictyostelium discoideum GN=aqpA PE... [more]
PIP24_ORYSJ2.925e-1140.00Aquaporin PIP2-4 OS=Oryza sativa subsp. japonica G... [more]
PIP11_MAIZE2.925e-1142.11Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
NIP14_ORYSJ2.925e-1139.56Aquaporin NIP1-4 OS=Oryza sativa subsp. japonica G... [more]
PIP28_ORYSJ4.989e-1136.21Probable aquaporin PIP2-8 OS=Oryza sativa subsp. j... [more]
PIP27_ORYSJ6.516e-1137.17Probable aquaporin PIP2-7 OS=Oryza sativa subsp. j... [more]
NIP51_ARATH6.516e-1138.38Probable aquaporin NIP5-1 OS=Arabidopsis thaliana ... [more]
NIP22_ORYSJ6.516e-1134.74Aquaporin NIP2-2 OS=Oryza sativa subsp. japonica G... [more]
NIP31_ARATH8.510e-1144.44Aquaporin NIP3-1 OS=Arabidopsis thaliana GN=NIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617550 ID=DN617550; Name=DN617550; organism=Citrus sinensis; type=EST; length=542bp
AAGCAATTTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCA
TAATTATCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATC
AACGGCCATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGT
AAAAGCAAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCT
TTTAGCTTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGA
AGAAGAACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCG
ACCCAGTAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCC
GAATGACACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCA
AGATGTTGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCC
AAGCTTCCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAG
TCCGAATGTCATCACGATCTCGAAAACGACTGCGTTCCATGC
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