DN617550

Overview
NameDN617550
Unique NameDN617550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:575..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.481e-36
Identity = 66/99 (66.67%), Postives = 79/99 (79.80%), Query Frame = -1
Query:  246 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFI 542
            A N +V EI++TFGLVY VY+T +DPK+GSLG IAP+AIG IVGANIL GG F GASMNPA +FGPALV W W +HW+YWVGP IG  LA ++YE+  I
Sbjct:  149 AVNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWVGPFIGSALAALIYEYMVI 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.983e-36
Identity = 74/110 (67.27%), Postives = 83/110 (75.45%), Query Frame = -1
Query:  213 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTE 542
            A   VV EI++TF LVYTVYATA DPKKGSLG IAPIAIGFIVGANILA G F G SMNPA SFGPA+ S  +  +W+YW GPLIGG LAG +Y   FI  +H  LPT+E
Sbjct:  139 AIQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFIT-AHAPLPTSE 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 9.983e-36
Identity = 75/107 (70.09%), Postives = 86/107 (80.37%), Query Frame = -1
Query:  210 VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 530
            VV EIV+TF LVYTVYATA DPKKGSLGTIAPIAIGFIVGANILA G F G SMNPA SFGPA+ + ++  +WVYWVGPLIGGGLAG+VY   FI  S++ +   +Y
Sbjct:  142 VVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDVFIG-SYQPVADQDY 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = -1
Query:  210 VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQS-HEQLPTTEY 530
            VV EI++TF LVYTVYATA DPKKGSLGTIAP+AIG IVGANILA G F G SMNPA SFGPA+ +  +  HWVYWVGPLIGGGLAG++Y   F+  S H  L + ++
Sbjct:  143 VVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVGANILAAGPFSGGSMNPARSFGPAVAAGDFSGHWVYWVGPLIGGGLAGLIYGNVFMGSSEHVPLASADF 250          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.703e-35
Identity = 76/110 (69.09%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  213 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTE 542
            A   VV EIV+TF LVYTVYATA DPKKGSLGTIAPIAIGFIVGANILA G F G SMNPA SFGPA+VS      W+YWVGPL+GG LAG++Y   FI  S+E + T E
Sbjct:  139 AVEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLVGGALAGLIYGDVFIG-SYEAVETRE 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.224e-35
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -1
Query:  210 VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQSHEQLPTTEY 530
            VV EIV+TF LVYTVYATA DPKKGSLGTIAP+AIGFIVGANILA G F G SMNPA SFGPA+ + ++  +WVYWVGPL+GGGLAG+VY   FI  S++ +   EY
Sbjct:  142 VVMEIVITFALVYTVYATAADPKKGSLGTIAPMAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLVGGGLAGLVYGDVFI-ASYQPVGQQEY 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.793e-35
Identity = 65/111 (58.56%), Postives = 83/111 (74.77%), Query Frame = -1
Query:  210 VFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFI-----NQSHEQLPTTEY 527
            + E+VMTFGL+YTVY TA+DPK+G++  IAP+AIG IVGANIL GG FDGA MNPA++FGP+LV W W  HW++WVGPL+G  LA +VYE+  I        H+ L T +Y
Sbjct:  146 ILEVVMTFGLMYTVYGTAIDPKRGAVSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWQWHQHWIFWVGPLLGAALAALVYEYAVIPIEPPPHHHQPLATEDY 256          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 66/99 (66.67%), Postives = 81/99 (81.82%), Query Frame = -1
Query:  240 NAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ 536
            +A++ E+VMTFGLVYTVYATA+D + G  G IAP+AIG + GANILAGG FDGA+MNPA +FGPALV W+W +HWVYW+GPLIG G+AG +YEF    Q
Sbjct:  150 HALLLEVVMTFGLVYTVYATAVDRRSGG-GDIAPLAIGLVAGANILAGGPFDGAAMNPARAFGPALVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQ 247          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.669e-31
Identity = 63/108 (58.33%), Postives = 82/108 (75.93%), Query Frame = -1
Query:  222 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFINQ-SHEQLP 542
            A   V+ E V+TF L++ VYAT +DP++ ++G + P+ +G +VGAN+LAGG F GASMNPA SFGPALV+  W +HWVYWVGPLIGG LAG+VY+  F+ Q  HE LP
Sbjct:  140 ALRGVLMEAVLTFSLLFAVYATVVDPRR-AVGGMGPLLVGLVVGANVLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIGGPLAGLVYDGLFMAQGGHEPLP 246          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.267e-30
Identity = 61/111 (54.95%), Postives = 80/111 (72.07%), Query Frame = -1
Query:  213 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFFIN-QSHEQLPTTE 542
            A  AV  E V+TF L++ VYAT +D ++ ++G + P+ +G +VGANILAGG + GASMNPA SFGPAL +  W +HW+YWVGPLIGG LAG+VYE  F+    HE LP  +
Sbjct:  139 AARAVAMEAVLTFSLLFAVYATVVDRRR-AVGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWVGPLIGGPLAGLVYEGLFMGPPGHEPLPRND 248          
The following BLAST results are available for this feature:
BLAST of DN617550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
TIP31_ARATH4.481e-3666.67Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIP_ANTMA9.983e-3667.27Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP21_ORYSJ9.983e-3670.09Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP21_ARATH1.304e-3566.67Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP23_ARATH1.703e-3569.09Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP23_MAIZE2.224e-3569.16Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIPA_PHAVU3.793e-3558.56Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP32_ORYSJ8.451e-3566.67Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE5.669e-3158.33Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP43_ORYSJ6.267e-3054.95Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617550 ID=DN617550; Name=DN617550; organism=Citrus sinensis; type=EST; length=542bp
AAGCAATTTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCA
TAATTATCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATC
AACGGCCATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGT
AAAAGCAAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCT
TTTAGCTTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGA
AGAAGAACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCG
ACCCAGTAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCC
GAATGACACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCA
AGATGTTGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCC
AAGCTTCCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAG
TCCGAATGTCATCACGATCTCGAAAACGACTGCGTTCCATGC
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