DN617550

Overview
NameDN617550
Unique NameDN617550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:575..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = -1
Query:  255 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 533
            A   EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  130 ATTVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = -1
Query:  255 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 533
            A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  128 ATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDF 219          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = -1
Query:  255 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 533
            A   EI +T   V  ++AT  + + G +G++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IGGGL  ++Y+F
Sbjct:  130 ATTVEIFLTLQFVLCIFATYDERRNGRMGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFSNHWVYWVGPIIGGGLGSLLYDF 221          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP8_MOUSE (Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 42/90 (46.67%), Postives = 62/90 (68.89%), Query Frame = -1
Query:  264 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIV 533
            A+  EI++T  LV  V   A++ K  ++G +AP +IGF V  +ILAGG+  GA MNPA +FGPA+++  WD HW+YW+GPL+ G   G++
Sbjct:  157 ALGIEIILTMLLVLAVCMGAVNEK--TMGPLAPFSIGFSVIVDILAGGSISGACMNPARAFGPAVMAGYWDFHWIYWLGPLLAGLFVGLL 244          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: MIP_SHEEP (Lens fiber major intrinsic protein OS=Ovis aries GN=MIP PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.731e-17
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = -1
Query:  255 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 533
            A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IG GL  ++Y+F
Sbjct:  130 ATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: MIP_BOVIN (Lens fiber major intrinsic protein OS=Bos taurus GN=MIP PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.731e-17
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = -1
Query:  255 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 533
            A + EI +T   V  ++AT  + + G LG++A +A+GF +    L G  + GA MNPA SF PA+++ ++ NHWVYWVGP+IG GL  ++Y+F
Sbjct:  130 ATIVEIFLTLQFVLCIFATYDERRNGRLGSVA-LAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDF 221          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  249 VVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 530
            V+ E ++TF LV+ V+    D ++  +   AP+AIG  + A  LA   + GASMNPA SFGPA+V  ++ + WVYWVGP++GG +AG VY  FF
Sbjct:  144 VLIEALITFMLVFVVHGVC-DNRRTDVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGNYTDLWVYWVGPIVGGIVAGAVYRLFF 236          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP_HAEIX (Aquaporin OS=Haematobia irritans exigua PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.084e-17
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = -1
Query:  249 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 533
            AV+ E ++TF LV  V   + DP +  +   AP+A+G  + A  L      GASMNPA SFGPA+V   W +HWVYWVGP++G  +A ++Y+F F
Sbjct:  144 AVLIEALITFILVVVVKGVS-DPGRTDIKGSAPLAVGLSIAAGHLCAIKLTGASMNPARSFGPAVVQNMWIDHWVYWVGPIVGAIVAALLYKFVF 237          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP8_HUMAN (Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 6.084e-17
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = -1
Query:  252 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFF 533
            A+V EI++T  L   V   A++ K  + G +AP +IGF V  +ILAGG   G  MNPA +FGPA+V+  W+ HW+YW+GPL+ G L G++   F
Sbjct:  157 ALVAEIILTTLLALAVCMGAINEK--TKGPLAPFSIGFAVTVDILAGGPVSGGCMNPARAFGPAVVANHWNFHWIYWLGPLLAGLLVGLLIRCF 248          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 5.151e-16
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -1
Query:  258 WNAVVFEIVMTFGLVYTVYATALDPKKGSLG--------TIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYE 539
            + A + E V+TF +VYTV+    DP+ G  G         +  + +G + GA +LA G+  GASMNPA SFGPA+VS  + N  VYW GP++G  +A +V++
Sbjct:  139 FGAGILEGVLTFMVVYTVHVAG-DPRGGGFGGRKGPAATALGALVVGAVTGACVLAAGSLTGASMNPARSFGPAVVSGHYSNQAVYWAGPMVGAAVAALVHQ 239          
The following BLAST results are available for this feature:
BLAST of DN617550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
MIP_CANFA9.387e-1845.16Lens fiber major intrinsic protein OS=Canis famili... [more]
MIP_RAT1.226e-1744.09Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE1.226e-1744.09Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQP8_MOUSE2.091e-1746.67Aquaporin-8 OS=Mus musculus GN=Aqp8 PE=2 SV=1[more]
MIP_SHEEP2.731e-1744.09Lens fiber major intrinsic protein OS=Ovis aries G... [more]
MIP_BOVIN2.731e-1744.09Lens fiber major intrinsic protein OS=Bos taurus G... [more]
AQP_ANOGA4.659e-1746.81Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
AQP_HAEIX6.084e-1745.26Aquaporin OS=Haematobia irritans exigua PE=2 SV=1[more]
AQP8_HUMAN6.084e-1745.74Aquaporin-8 OS=Homo sapiens GN=AQP8 PE=2 SV=2[more]
TIP51_ORYSJ5.151e-1641.18Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617550 ID=DN617550; Name=DN617550; organism=Citrus sinensis; type=EST; length=542bp
AAGCAATTTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCA
TAATTATCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATC
AACGGCCATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGT
AAAAGCAAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCT
TTTAGCTTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGA
AGAAGAACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCG
ACCCAGTAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCC
GAATGACACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCA
AGATGTTGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCC
AAGCTTCCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAG
TCCGAATGTCATCACGATCTCGAAAACGACTGCGTTCCATGC
back to top