DN617550

Overview
NameDN617550
Unique NameDN617550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:575..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.393e-13
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = -1
Query:  255 EIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 521
            EI++TF LV  V A   D ++  +    P+AIG  V    L    + G  MNPA SFG A+++ ++  HW++WVGP+IGG  A I+Y+F
Sbjct:  146 EILVTFQLVLCVVAVT-DRRRHDVSGSVPLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVLTKNFTYHWIFWVGPMIGGAAAAIIYDF 233          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: BIB_DROME (Neurogenic protein big brain OS=Drosophila melanogaster GN=bib PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = -1
Query:  249 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFFF 542
            AW     E ++TF LV   Y  + DP K  +G  A  +IG    A       +    +NPA S GP+ V   WD+HWVYW GPL+GG  +G+VYE+ F
Sbjct:  186 AWERFGVEFILTF-LVVLCYFVSTDPMKKFMGNSAA-SIGCAYSACCFVSMPY----LNPARSLGPSFVLNKWDSHWVYWFGPLVGGMASGLVYEYIF 277          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = -1
Query:  237 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDN-HWVYWVGPLIGGGLAGIVYEFFFINQS 542
            A  AVV E+++TF L   V+++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPA++   + + HWV+WVGP++G   A I+Y +     S
Sbjct:  128 AGQAVVAEMILTFQLALCVFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVIMSRFSSAHWVFWVGPIVGAATAAIIYFYLLFPHS 229          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.081e-13
Identity = 36/96 (37.50%), Postives = 57/96 (59.38%), Query Frame = -1
Query:  255 AWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 542
            A  AV  E+ +T  LV  ++ +  D ++G       ++IGF V    L G  + G SMNPA S  PA+V+  +D+HWV+W+GPL+G  +A ++Y +
Sbjct:  127 AGQAVTVELFLTLQLVLCIFPST-DKRRGKQLGHPALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGKFDDHWVFWIGPLVGAIVASLLYNY 221          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = -1
Query:  255 VVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 530
            V  EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP  G  +A   ++F
Sbjct:  170 VAAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQF 267          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 41/96 (42.71%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  255 EIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 521
            EIV TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V      WD+HW++WVGPL+G  +A   +++
Sbjct:  181 EIVGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQY 275          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: NIP42_ARATH (Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = -1
Query:  255 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 533
            A+V EI+++F L++ +   A D +  + G +A IA+G  +  N+   G   GASMNPA S GPA+V   +   WVY VGP +G    G VY F
Sbjct:  161 ALVAEIIISFLLMFVISGVATDSR--ATGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNF 251          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.330e-13
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  237 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWD-NHWVYWVGPLIGGGLAGIVYEFFFINQS 533
            AVV E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPA+V   +  +HWV+WVGP++G  LA I+Y +     S
Sbjct:  131 AVVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGAVLAAILYFYLLFPSS 229          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  255 EIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 521
            EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+ W++WVGP +G  +A   ++F
Sbjct:  173 EIIGTFVLVYTVFS-ATDPKRNARDSHIPVLAPLPIGFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQF 267          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 40/96 (41.67%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  255 EIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 521
            EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA SFG A++     +WD+ W++WVGP+IG   A   ++F
Sbjct:  174 EIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQF 268          
The following BLAST results are available for this feature:
BLAST of DN617550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
AQPA_RANES2.393e-1341.57Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
BIB_DROME4.081e-1340.82Neurogenic protein big brain OS=Drosophila melanog... [more]
AQP5_SHEEP4.081e-1338.83Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP2_SHEEP4.081e-1337.50Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
PIP25_ARATH5.330e-1340.40Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_MAIZE5.330e-1342.71Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
NIP42_ARATH5.330e-1340.86Probable aquaporin NIP4-2 OS=Arabidopsis thaliana ... [more]
AQP5_MOUSE5.330e-1340.00Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
PIP26_ARATH6.961e-1340.63Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP24_ARATH6.961e-1341.67Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617550 ID=DN617550; Name=DN617550; organism=Citrus sinensis; type=EST; length=542bp
AAGCAATTTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCA
TAATTATCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATC
AACGGCCATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGT
AAAAGCAAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCT
TTTAGCTTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGA
AGAAGAACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCG
ACCCAGTAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCC
GAATGACACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCA
AGATGTTGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCC
AAGCTTCCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAG
TCCGAATGTCATCACGATCTCGAAAACGACTGCGTTCCATGC
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