DN617550

Overview
NameDN617550
Unique NameDN617550
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:575..1116. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  255 EIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 521
            EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A++      WD+HW++WVGPL+G  +A   +++
Sbjct:  179 EIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQY 273          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP6_RAT (Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = -1
Query:  255 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 533
            AV  E+V+T  LV  V+A+ +D ++ +LG+ A + IG  V    L G  F G SMNPA SFGPA++   +  HW++WVGPL G  LA ++Y F
Sbjct:  141 AVAVELVLTLQLVLCVFAS-MDSRQ-TLGSPAAM-IGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHWIFWVGPLTGAVLASLIYNF 230          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.961e-13
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  237 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWD-NHWVYWVGPLIGGGLAGIVYEFFFINQS 533
            AVV E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPA+V   +  +HWV+WVGP++G  +A I+Y +     S
Sbjct:  131 AVVVEMILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGAAVAAILYFYLLFPNS 229          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = -1
Query:  255 EIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYEF 521
            EI+ TF LVYTV++ A DPK+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  +A   +++
Sbjct:  174 EIIGTFVLVYTVFS-ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQY 268          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: NIP41_ARATH (Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = -1
Query:  261 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVY 533
            A+V EI+++F L++ +   A D +  ++G +A IA+G  +  N+   G   GASMNPA S GPALV   + + WVY VGP++G    G VY
Sbjct:  161 ALVAEIIISFLLMFVISGVATDNR--AVGELAGIAVGMTIMVNVFVAGPISGASMNPARSLGPALVMGVYKHIWVYIVGPVLGVISGGFVY 249          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: NIP11_MAIZE (Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.092e-13
Identity = 42/117 (35.90%), Postives = 64/117 (54.70%), Query Frame = -1
Query:  186 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEFF-FINQSHEQLPTTEY*AKSLPSM 533
            ++V EI+ TF L++ +   A D +  ++G +A +A+G  +  N+L  G   GASMNPA S GPALVS  + + WVY VGP++G       Y    F N+   ++  +    KS   M
Sbjct:  162 SLVIEIITTFYLMFVISGVATDNR--AIGELAGLAVGATILLNVLIAGPVSGASMNPARSVGPALVSGEYTSIWVYVVGPVVGAVAGAWAYNLIRFTNKPLREITKSTSFLKSTSRM 276          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: NIP21_ORYSJ (Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica GN=NIP2-1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = -1
Query:  255 WNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 539
            W+++V E+++TF +++   A A D +  ++G +A +A+G  V    +  GA  G SMNPA + GPAL S  +D  W+Y++GP++G       Y F
Sbjct:  164 WHSLVVEVIVTFNMMFVTLAVATDTR--AVGELAGLAVGSAVCITSIFAGAISGGSMNPARTLGPALASNKFDGLWIYFLGPVMGTLSGAWTYTF 256          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP6_HUMAN (Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = -1
Query:  255 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 533
            AV  E+++T  LV  V+A+  D ++ S G+ A + IG  V    L G  F G SMNPA SFGPA++   +  HWV+WVGPL+G  LA ++Y F
Sbjct:  144 AVAVELLLTLQLVLCVFAST-DSRQTS-GSPATM-IGISVALGHLIGIHFTGCSMNPARSFGPAIIIGKFTVHWVFWVGPLMGALLASLIYNF 233          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP5_RAT (Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = -1
Query:  237 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWD-NHWVYWVGPLIGGGLAGIVYEFFFINQS 533
            A+V E+++TF L   ++++    +   +G+ A ++IG  V    L G  F G SMNPA SFGPA+V   +  +HWV+WVGP++G  LA I+Y +     S
Sbjct:  131 AMVVELILTFQLALCIFSSTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPSHWVFWVGPIVGAMLAAILYFYLLFPSS 229          
BLAST of DN617550 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = -1
Query:  237 AVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDN-HWVYWVGPLIGGGLAGIVYEFFFINQS 533
            A+V E+++TF L   ++A+    +   +G+ A ++IG  V    L G  F G SMNPA SFGPA+V   +   HWV+WVGP++G  LA I+Y +     S
Sbjct:  131 AMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS 229          
The following BLAST results are available for this feature:
BLAST of DN617550 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
PIP21_MAIZE6.961e-1340.63Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
AQP6_RAT6.961e-1345.16Aquaporin-6 OS=Rattus norvegicus GN=Aqp6 PE=1 SV=1[more]
AQP5_PIG6.961e-1339.00Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
PIP25_MAIZE9.092e-1340.63Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
NIP41_ARATH9.092e-1341.76Putative aquaporin NIP4-1 OS=Arabidopsis thaliana ... [more]
NIP11_MAIZE9.092e-1335.90Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1[more]
NIP21_ORYSJ1.187e-1235.79Aquaporin NIP2-1 OS=Oryza sativa subsp. japonica G... [more]
AQP6_HUMAN1.187e-1245.16Aquaporin-6 OS=Homo sapiens GN=AQP6 PE=2 SV=2[more]
AQP5_RAT1.187e-1239.00Aquaporin-5 OS=Rattus norvegicus GN=Aqp5 PE=2 SV=1[more]
AQP5_HUMAN1.187e-1240.00Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617550 ID=DN617550; Name=DN617550; organism=Citrus sinensis; type=EST; length=542bp
AAGCAATTTGAAGTGCGAGTAGAAATACAAAGCCATAGCCTGGGACTCCA
TAATTATCGCGATACAATAATCCAGCAGCTCATGACGATGGAAACAGATC
AACGGCCATAAATTAAACACAAATTAAAAATAAAAAGAAAGAACCTCGGT
AAAAGCAAATTAAATACAACATCCGTGCAAACTCACATAGATGGCAAGCT
TTTAGCTTAGTACTCGGTTGTTGGGAGCTGCTCGTGAGACTGGTTAATGA
AGAAGAACTCGTAGACGATGCCAGCTAGCCCACCACCGATGAGTGGCCCG
ACCCAGTAGACCCAGTGGTTGTCCCAGCTCCAGCTTACCAAAGCTGGCCC
GAATGACACTGCTGGGTTCATTGAAGCTCCATCAAACGCCCCGCCCGCCA
AGATGTTGGCTCCTACAATGAAACCAATTGCAATTGGTGCAATTGTCCCC
AAGCTTCCCTTCTTTGGGTCCAGGGCTGTGGCATACACTGTGTACACTAG
TCCGAATGTCATCACGATCTCGAAAACGACTGCGTTCCATGC
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