DN617549

Overview
NameDN617549
Unique NameDN617549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.349e-14
Identity = 44/120 (36.67%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQ-SYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+     RN     A GF+ Y +F+ A   Y    F TTG      +E+ AFLA    +T+ G+  A  GP + G C+  E + +  +YC+   K  +PC  G +YYGRG I I +NYNY
Sbjct:   85 FDQMLLHRNDQACAAKGFYTYDAFVAAANAYPD--FATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEP--KPEWPCAAGKKYYGRGPIQITYNYNY 200          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.301e-14
Identity = 42/121 (34.71%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPS--QSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+     RN     A  F+ Y +F+ A   +    F TTG    + +E+ AFLA    +T+ G+  A  GP + G C+  E + +    YC  S +  +PC  G +YYGRG I I +NYNY
Sbjct:   88 FDQMLLHRNDAACPAKNFYTYDAFVAAANAFP--SFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQ--WPCAAGKKYYGRGPIQISYNYNY 204          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.339e-13
Identity = 42/122 (34.43%), Postives = 59/122 (48.36%), Query Frame = 1
Query:  274 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMK-EICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEM--SPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+     RN     A  F+ Y +F+ A   +   GF   G   D  K E+ AFLA    +T+ G+  A  GP A G C+  E   +    YC  S ++  PC  G +YYGRG I + +N+NY
Sbjct:   90 FDQMLLHRNDAACPASNFYTYDAFVAAASAFP--GFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQW--PCAAGKKYYGRGPIQLSYNFNY 207          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.265e-12
Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 1
Query:  271 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            QFE     R+     A GF+ Y++F+ A   +    F  TG    + +E+ AFLA     TS       GGP + G CY      +  +C  + ++  PC PG  Y+ RG + I +NYNY
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNY 213          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.265e-12
Identity = 39/120 (32.50%), Postives = 57/120 (47.50%), Query Frame = 1
Query:  271 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            QFE     R+     A GF+ Y++F+ A   +    F  TG    + +E+ AFLA     TS       GGP + G CY      +  +C  + ++  PC PG  Y+ RG + I +NYNY
Sbjct:  105 QFERMLPHRDDAACPARGFYAYRAFVAAAGAFP--AFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARW--PCAPGKAYHARGPMQIAYNYNY 213          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.396e-11
Identity = 41/103 (39.81%), Postives = 53/103 (51.46%), Query Frame = 1
Query:  325 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+  QSF+ A   Y   GF    T  D  +EI AF AHV  +T               +CY +E++  S  YCD + K  +PC PG +YYGRG + I WNYNY
Sbjct:  112 FYTRQSFLNAAHSYS--GFARDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGASMDYCDKNNKQ-WPCQPGKKYYGRGPLQISWNYNY 198          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.381e-11
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 1
Query:  325 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+   +F++A   Y   GF   GT+++  +EI AF AHV  +T                CY  E++ S +YCD S +  +PC  G +YYGRG + I WNYNY
Sbjct:  105 FYTRSAFLSAVNAYP--GFAHGGTEVEGKREIAAFFAHVTHETG-------------HFCYISEINKSNAYCDASNRQ-WPCAAGQKYYGRGPLQISWNYNY 190          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 40/103 (38.83%), Postives = 53/103 (51.46%), Query Frame = 1
Query:  325 FWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            F+  QSF+ A   Y   GF    T  D  +EI AF AHV  +T               +CY +E++  +  YCD S K  +PC PG +YYGRG + I WN+NY
Sbjct:  109 FYTRQSFLNAARSYS--GFANDRTNDDSKREIAAFFAHVTHETG-------------HMCYINEINGANMDYCDKSNKQ-WPCQPGKKYYGRGPLQISWNFNY 195          
BLAST of DN617549 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 40/106 (37.74%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  316 AVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAXGLCYNHEMS-PSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 630
            A GF+   +F+TA   Y    FG TG+  D  +EI AF AH   +T                CY  E+  PS++YCD++    +PC  G  YYGRG + I WN+NY
Sbjct:   90 AKGFYTRDAFLTAAGGYP--SFGRTGSVDDSKREIAAFFAHANHET-------------IKFCYIEEIDGPSKNYCDET-STQWPCMAGKGYYGRGPLQISWNFNY 179          
The following BLAST results are available for this feature:
BLAST of DN617549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CHI3_ORYSJ1.349e-1436.67Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_ORYSJ2.301e-1434.71Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ4.339e-1334.43Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI7_ORYSJ6.265e-1232.50Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI6.265e-1232.50Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI5_ORYSJ1.396e-1139.81Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE2.381e-1137.25Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_ORYSJ3.109e-1138.83Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_ORYSJ4.061e-1137.74Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617549 ID=DN617549; Name=DN617549; organism=Citrus sinensis; type=EST; length=631bp
ATTTCTCTCATCTTCCCCCAAGTGAATCTCGAAACAACAGGTAGATCTGG
TGAGAACGAGAAAATGAAGATGAAGAATGGCAGTGTGGCAATGACACTGA
CAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAA
TCAGAGAAGGTGATAGTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAA
AGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACGATAT
CAGACTATTTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAAC
ACGCCGGTGGCACATGCCGTGGGATTCTGGGATTATCAGTCTTTCATTAC
TGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGC
TTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAG
ACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGGCCTGNGGACT
TTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGTGATGATTCCT
ACAAATACACATATCCCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGT
GCTATACCTATATACTGGAACTATAACTATG
back to top