DN617546

Overview
NameDN617546
Unique NameDN617546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.516e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            +++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 DEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT2_ONCVO (Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.516e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPI
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT1_ONCVO (Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.516e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPI
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT1_BOMMO (Actin, muscle-type A1 OS=Bombyx mori PE=3 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.516e-84
Identity = 149/163 (91.41%), Postives = 157/163 (96.32%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            +D++ LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 DDVRALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGLMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTG_XENTR (Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.980e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPI
Sbjct:    3 EEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTG_XENLA (Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.980e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPI
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTG_TRIVU (Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=ACTG1 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.980e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPI
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTG_RAT (Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.980e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPI
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTG_RANLE (Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.980e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPI
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTG_MOUSE (Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 1.980e-84
Identity = 150/163 (92.02%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E+I  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPI
Sbjct:    3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 165
The following BLAST results are available for this feature:
BLAST of DN617546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACT3_LIMPO1.516e-8492.02Actin-3 OS=Limulus polyphemus PE=1 SV=1[more]
ACT2_ONCVO1.516e-8492.02Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1[more]
ACT1_ONCVO1.516e-8492.02Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1[more]
ACT1_BOMMO1.516e-8491.41Actin, muscle-type A1 OS=Bombyx mori PE=3 SV=1[more]
ACTG_XENTR1.980e-8492.02Actin, cytoplasmic 2 OS=Xenopus tropicalis GN=actg... [more]
ACTG_XENLA1.980e-8492.02Actin, cytoplasmic 2 OS=Xenopus laevis GN=actg1 PE... [more]
ACTG_TRIVU1.980e-8492.02Actin, cytoplasmic 2 OS=Trichosurus vulpecula GN=A... [more]
ACTG_RAT1.980e-8492.02Actin, cytoplasmic 2 OS=Rattus norvegicus GN=Actg1... [more]
ACTG_RANLE1.980e-8492.02Actin, cytoplasmic 2 OS=Rana lessonae GN=actg1 PE=... [more]
ACTG_MOUSE1.980e-8492.02Actin, cytoplasmic 2 OS=Mus musculus GN=Actg1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617546 ID=DN617546; Name=DN617546; organism=Citrus sinensis; type=EST; length=615bp
CCCCCCTCCGGGCAGGTACCAAATACAGAGCGATAGAGAGAATCGACACT
CTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTA
ACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTG
ACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCA
AGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCAT
GGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGA
AAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGC
AACTGGGATGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAGCT
TCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACTGAGGCACCTCTTA
ACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGANACTTTC
AATGTGCCAGCCATGTACGTTGCCATCCAGGCTGTTCTATCTCTTTATGC
CAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTC
ATACTGTACCAATTT
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