DN617546

Overview
NameDN617546
Unique NameDN617546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:10..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTC_CHICK (Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=ACTC1 PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 8.037e-86
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTC_BOVIN (Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACTC1 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 8.037e-86
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT2_XENTR (Actin, alpha sarcomeric/cardiac OS=Xenopus tropicalis PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 8.037e-86
Identity = 151/167 (90.42%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D E+   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDDEETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT2_MOLOC (Actin, muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.050e-85
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 3 
Query:  114 MADAEDIQP-LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D E+ Q  LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH VPI
Sbjct:    1 MEDEEEEQTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHNVPI 168
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_RAT (Actin, alpha skeletal muscle OS=Rattus norvegicus GN=Acta1 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.371e-85
Identity = 150/167 (89.82%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_RABIT (Actin, alpha skeletal muscle OS=Oryctolagus cuniculus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.371e-85
Identity = 150/167 (89.82%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_PONAB (Actin, alpha skeletal muscle OS=Pongo abelii GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.371e-85
Identity = 150/167 (89.82%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_PIG (Actin, alpha skeletal muscle OS=Sus scrofa GN=ACTA1 PE=3 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.371e-85
Identity = 150/167 (89.82%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_MOUSE (Actin, alpha skeletal muscle OS=Mus musculus GN=Acta1 PE=1 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.371e-85
Identity = 150/167 (89.82%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_HUMAN (Actin, alpha skeletal muscle OS=Homo sapiens GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 1.371e-85
Identity = 150/167 (89.82%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPI 167
The following BLAST results are available for this feature:
BLAST of DN617546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACTC_CHICK8.037e-8690.42Actin, alpha cardiac muscle 1 OS=Gallus gallus GN=... [more]
ACTC_BOVIN8.037e-8690.42Actin, alpha cardiac muscle 1 OS=Bos taurus GN=ACT... [more]
ACT2_XENTR8.037e-8690.42Actin, alpha sarcomeric/cardiac OS=Xenopus tropica... [more]
ACT2_MOLOC1.050e-8591.67Actin, muscle-type OS=Molgula oculata PE=3 SV=1[more]
ACTS_RAT1.371e-8589.82Actin, alpha skeletal muscle OS=Rattus norvegicus ... [more]
ACTS_RABIT1.371e-8589.82Actin, alpha skeletal muscle OS=Oryctolagus cunicu... [more]
ACTS_PONAB1.371e-8589.82Actin, alpha skeletal muscle OS=Pongo abelii GN=AC... [more]
ACTS_PIG1.371e-8589.82Actin, alpha skeletal muscle OS=Sus scrofa GN=ACTA... [more]
ACTS_MOUSE1.371e-8589.82Actin, alpha skeletal muscle OS=Mus musculus GN=Ac... [more]
ACTS_HUMAN1.371e-8589.82Actin, alpha skeletal muscle OS=Homo sapiens GN=AC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617546 ID=DN617546; Name=DN617546; organism=Citrus sinensis; type=EST; length=615bp
CCCCCCTCCGGGCAGGTACCAAATACAGAGCGATAGAGAGAATCGACACT
CTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTA
ACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTG
ACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCA
AGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCAT
GGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGA
AAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGC
AACTGGGATGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAGCT
TCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACTGAGGCACCTCTTA
ACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGANACTTTC
AATGTGCCAGCCATGTACGTTGCCATCCAGGCTGTTCTATCTCTTTATGC
CAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTC
ATACTGTACCAATTT
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