DN617546

Overview
NameDN617546
Unique NameDN617546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ARP4_ASHGO (Actin-related protein 4 OS=Ashbya gossypii GN=ARP4 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.548e-12
Identity = 46/165 (27.88%), Postives = 79/165 (47.88%), Query Frame = 3
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            ++I  +V D G+     G++G D P+A+ PS  G+          G+KD    +++    R    +   +++G V +W+  EK W     +ELR       P LLTE   N + NR+K  +++  + +  A Y+   A    +A GR T +V+D G  V+   P+
Sbjct:   12 DEITAVVIDPGSFTTNIGYSGTDCPQAILPSCYGKYTE-------GEKDELFSEQSIGLPRKDYEIHNIVQNGEVVDWEKAEKQWDWAIRSELRFETNSGMPALLTEPIWNSEENRKKSLEVLLESMDFSACYLVPTATAVSFAMGRPTCLVVDIGHDVTSVCPV 169          
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ARP4_YEAST (Actin-related protein 4 OS=Saccharomyces cerevisiae GN=ARP4 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 45/164 (27.44%), Postives = 74/164 (45.12%), Query Frame = 3
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            +++  +V D G+     G++G D P+++ PS+ G+          G K  +        R    LK  IE+G+V +WD  ++ W     NEL +      P LLTE   N   NR+K  +++       A Y+A  +    +A+GR   +V+D G       PI
Sbjct:   12 DEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGK-----YTADEGNKKIFSEQSIGIPRKDYELKPIIENGLVIDWDTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHDTCSVSPI 170          
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ARP5_DICDI (Actin-related protein 5 OS=Dictyostelium discoideum GN=arpE PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 45/162 (27.78%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  138 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT-GVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYA------SGRTTGIVLDSGDGVSH 602
            P++ DNG+   +AGFA D +P+ +F S+VG+ + T   +VG   K+   GD ++     LT+K P +  ++ +    E I+ + F+        E+PVL+TE   NP   R+ M++++F  +N+ ++   I ++ S Y        G    +++ S    +H
Sbjct:   32 PIIIDNGSYQCRAGFANDISPKLIFRSLVGKVKSTSSPIVGNSLKE---GDISR-----LTIKSPFDSNLLVHPPSQESIFDYIFHKFGIENEIENPVLITEPTSNPTFCRKYMSELLFECYNIKSVVYGIDSLFSFYGQRDQFKDGGKNSLIIGSSFNTTH 185          
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ARP5_AEDAE (Actin-related protein 5 OS=Aedes aegypti GN=Arp5 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 43/166 (25.90%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  141 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQ---KDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYAS-GRTTGIVLDSGDGVSHTVPI 614
            +V DNG+   +AG+AG D P  VF +++ +PR         +       +G++  +   +   L+   +  +V++    E+I+ + F   L +  +    HPVLLTE   NP  +R  M+++MF  + +P +  A+  +LS   + G+ +G+++  G   +H +P+
Sbjct:   30 IVIDNGSYHCRAGWAGKDVPSLVFKNVLAKPRKDRSKKDTSEVVVPTVQIGNDITNIEAVRFQLRTQFDRNVVTHLHVQEQIFDYLF-GRLGINADGCVPHPVLLTECVANPNYSRMLMSELMFECYGIPGIVYAVDGLLSYRMNGGQDSGLIVSCGYQATHVIPV 194          
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ARP5_CHICK (Actin-related protein 5 OS=Gallus gallus GN=ACTR5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.003e-11
Identity = 51/172 (29.65%), Postives = 87/172 (50.58%), Query Frame = 3
Query:  138 PLVCDNGTGMVKAGFAGDDA-----PRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGIL-TLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGR----TTGIVLDSGDGVSHTVPI 614
            PLV DNG+   +AG+A  D      P   F S+  R R  G   G G  +  VG++  S   +   L+ P +  +    +  E ++ H F   L VA +   +HP++LTEA  NP  +R+ M++++F  + VP +   + ++ S Y + R     +G+V+ SG   +H +P+
Sbjct:   33 PLVIDNGSFQTRAGWAAADPSVPAEPLLRFRSLAARSR--GARGGAGA-ETQVGNDLGSPEPLRWLLRSPFDRNVPVQLELQELLFDHVF-QRLGVASQGCVDHPIVLTEAVCNPLYSRQMMSELLFECYQVPKVSYGVDSLYSFYHNRRQNWPCSGLVISSGYQCTHILPV 200          
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ARP6_CRYNE (Actin-like protein ARP6 OS=Cryptococcus neoformans GN=ARP6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.919e-11
Identity = 53/169 (31.36%), Postives = 76/169 (44.97%), Query Frame = 3
Query:  141 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKY--PIEHGIVSNWDDMEKIWHHTFY-NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVL----SLYASGR----TTGIVLDSGDGVSHTVPI 614
            L+ DNG   +KAG +G D    V P+ + R R         +K  YVGDE  + + +  + Y  P E G++ NWD    IW   F  + L + P E  +L+TE   N     E   Q++F  F   + +    A L     LY S +       IV+D G   +H VPI
Sbjct:    7 LIIDNGAYEIKAGISGVDWEPRVLPNSIARSR--------TEKRVYVGDEIDNCKDLSGIVYRRPFEKGMLVNWDAERIIWDRLFSPSVLNINPTETSLLVTEPYFNLPNIAETYDQMIFEEFEFQSYFRCAPAALIPYGGLYESDQGIPPQCTIVIDMGYSYTHVVPI 167          
The following BLAST results are available for this feature:
BLAST of DN617546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ARP4_ASHGO1.548e-1227.88Actin-related protein 4 OS=Ashbya gossypii GN=ARP4... [more]
ARP4_YEAST2.021e-1227.44Actin-related protein 4 OS=Saccharomyces cerevisia... [more]
ARP5_DICDI2.640e-1227.78Actin-related protein 5 OS=Dictyostelium discoideu... [more]
ARP5_AEDAE4.503e-1225.90Actin-related protein 5 OS=Aedes aegypti GN=Arp5 P... [more]
ARP5_CHICK1.003e-1129.65Actin-related protein 5 OS=Gallus gallus GN=ACTR5 ... [more]
ARP6_CRYNE2.919e-1131.36Actin-like protein ARP6 OS=Cryptococcus neoformans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617546 ID=DN617546; Name=DN617546; organism=Citrus sinensis; type=EST; length=615bp
CCCCCCTCCGGGCAGGTACCAAATACAGAGCGATAGAGAGAATCGACACT
CTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTA
ACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTG
ACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCA
AGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCAT
GGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGA
AAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGC
AACTGGGATGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAGCT
TCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACTGAGGCACCTCTTA
ACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGANACTTTC
AATGTGCCAGCCATGTACGTTGCCATCCAGGCTGTTCTATCTCTTTATGC
CAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTC
ATACTGTACCAATTT
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