DN617546

Overview
NameDN617546
Unique NameDN617546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:10..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTA_LIMPO (Actin, acrosomal process isoform OS=Limulus polyphemus PE=2 SV=1)

HSP 1 Score: 314.694 bits (805), Expect = 2.338e-85
Identity = 152/163 (93.25%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT3_DICDI (Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 SV=3)

HSP 1 Score: 314.694 bits (805), Expect = 2.338e-85
Identity = 149/165 (90.30%), Postives = 160/165 (96.97%), Query Frame = 3 
Query:  120 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            ++ED+Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPR+TGVMVGMGQKD+Y+GDEAQS++GILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPI
Sbjct:    2 ESEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRYTGVMVGMGQKDSYIGDEAQSRKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT_CRAGI (Actin OS=Crassostrea gigas PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 3.054e-85
Identity = 153/163 (93.87%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            EDI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 EDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTM_MOLOC (Actin, larval muscle-type OS=Molgula oculata PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 3.989e-85
Identity = 148/166 (89.16%), Postives = 158/166 (95.18%), Query Frame = 3 
Query:  117 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            ++ ED   +VCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELR+APEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDG+SH VPI
Sbjct:    3 SEEEDQTAIVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRIAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGISHNVPI 168
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT3_PODCA (Actin-3 OS=Podocoryne carnea GN=ACT3 PE=3 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 3.989e-85
Identity = 154/167 (92.22%), Postives = 159/167 (95.21%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            MAD +D+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    1 MAD-DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT2_SCHMA (Actin-2 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 3.989e-85
Identity = 153/167 (91.62%), Postives = 159/167 (95.21%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            MAD E++Q LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYV IQAVLSLYASGRTTGIVLDSGDGV+HTVPI
Sbjct:    1 MAD-EEVQALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVGIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT1_PODCA (Actin-1/2 OS=Podocoryne carnea GN=ACTIA PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 3.989e-85
Identity = 154/167 (92.22%), Postives = 159/167 (95.21%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            MAD +D+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    1 MAD-DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_OREMO (Actin, alpha skeletal muscle OS=Oreochromis mossambicus GN=acta1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.210e-85
Identity = 148/167 (88.62%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLD+GDGV+H VP+
Sbjct:    1 MCDDDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDAGDGVTHNVPV 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_CYPCA (Actin, alpha skeletal muscle OS=Cyprinus carpio GN=acta1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.210e-85
Identity = 148/167 (88.62%), Postives = 158/167 (94.61%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVLSLYASGRTTGIVLD+GDGV+H VP+
Sbjct:    1 MCDDDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDAGDGVTHNVPV 167
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTS_ATRMM (Actin, alpha skeletal muscle OS=Atractaspis microlepidota microlepidota GN=ACTA1 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 5.210e-85
Identity = 149/167 (89.22%), Postives = 157/167 (94.01%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            M D ++   LVCDNG+G+VKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGI++NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMF TFNVPAMYVAIQAVL LYASGRTTGIVLDSGDGV+H VPI
Sbjct:    1 MCDEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLPLYASGRTTGIVLDSGDGVTHNVPI 167
The following BLAST results are available for this feature:
BLAST of DN617546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACTA_LIMPO2.338e-8593.25Actin, acrosomal process isoform OS=Limulus polyph... [more]
ACT3_DICDI2.338e-8590.30Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 S... [more]
ACT_CRAGI3.054e-8593.87Actin OS=Crassostrea gigas PE=2 SV=1[more]
ACTM_MOLOC3.989e-8589.16Actin, larval muscle-type OS=Molgula oculata PE=3 ... [more]
ACT3_PODCA3.989e-8592.22Actin-3 OS=Podocoryne carnea GN=ACT3 PE=3 SV=1[more]
ACT2_SCHMA3.989e-8591.62Actin-2 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT1_PODCA3.989e-8592.22Actin-1/2 OS=Podocoryne carnea GN=ACTIA PE=2 SV=1[more]
ACTS_OREMO5.210e-8588.62Actin, alpha skeletal muscle OS=Oreochromis mossam... [more]
ACTS_CYPCA5.210e-8588.62Actin, alpha skeletal muscle OS=Cyprinus carpio GN... [more]
ACTS_ATRMM5.210e-8589.22Actin, alpha skeletal muscle OS=Atractaspis microl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617546 ID=DN617546; Name=DN617546; organism=Citrus sinensis; type=EST; length=615bp
CCCCCCTCCGGGCAGGTACCAAATACAGAGCGATAGAGAGAATCGACACT
CTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTA
ACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTG
ACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCA
AGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCAT
GGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGA
AAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGC
AACTGGGATGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAGCT
TCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACTGAGGCACCTCTTA
ACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGANACTTTC
AATGTGCCAGCCATGTACGTTGCCATCCAGGCTGTTCTATCTCTTTATGC
CAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTC
ATACTGTACCAATTT
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