DN617546

Overview
NameDN617546
Unique NameDN617546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:10..624. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTC_HALRO (Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 155/163 (95.09%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            ED+  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPI
Sbjct:    4 EDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACTB_XENBO (Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 153/167 (91.62%), Postives = 159/167 (95.21%), Query Frame = 3 
Query:  114 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            MAD +DI  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGV+HTVPI
Sbjct:    1 MAD-DDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT5C_ANOGA (Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT4_BOMMO (Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT3_BOMMO (Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT3B_HELAM (Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT3A_HELAM (Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT2_STRFN (Actin-15B OS=Strongylocentrotus franciscanus PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPI
Sbjct:    4 DDVAALVIDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            E++  LV DNG+GM KAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI
Sbjct:    4 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166
[Close]
BLAST of DN617546 vs. ExPASy Swiss-Prot
Match: ACT1_STRFN (Actin-15A OS=Strongylocentrotus franciscanus PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 6.804e-85
Identity = 151/163 (92.64%), Postives = 156/163 (95.71%), Query Frame = 3 
Query:  126 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFXTFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
            +D+  LV DNG+GMVKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKD+YVGDEAQSKRGILTLKYPIEHGIV+NWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF TFN PAMYVAIQAVLSLYASGRTTGIV DSGDGVSHTVPI
Sbjct:    4 DDVAALVIDNGSGMVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVFDSGDGVSHTVPI 166
The following BLAST results are available for this feature:
BLAST of DN617546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 456
Match NameE-valueIdentityDescription
ACTC_HALRO6.804e-8592.64Actin, nonmuscle OS=Halocynthia roretzi GN=CA1 PE=... [more]
ACTB_XENBO6.804e-8591.62Actin, cytoplasmic 1 OS=Xenopus borealis GN=actb P... [more]
ACT5C_ANOGA6.804e-8592.64Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1[more]
ACT4_BOMMO6.804e-8592.64Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV... [more]
ACT3_BOMMO6.804e-8592.64Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3[more]
ACT3B_HELAM6.804e-8592.64Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=... [more]
ACT3A_HELAM6.804e-8592.64Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=... [more]
ACT2_STRFN6.804e-8592.64Actin-15B OS=Strongylocentrotus franciscanus PE=2 ... [more]
ACT2_DROME6.804e-8592.64Actin-42A OS=Drosophila melanogaster GN=Act42A PE=... [more]
ACT1_STRFN6.804e-8592.64Actin-15A OS=Strongylocentrotus franciscanus PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617546 ID=DN617546; Name=DN617546; organism=Citrus sinensis; type=EST; length=615bp
CCCCCCTCCGGGCAGGTACCAAATACAGAGCGATAGAGAGAATCGACACT
CTCAGCTAGACTCCATCTTCGAATTTTTCTCTCGTCGTCTCTTCAATCTA
ACTTTTATAAAAAATGGCCGATGCTGAGGATATTCAACCCCTTGTTTGTG
ACAATGGAACTGGAATGGTGAAGGCTGGATTTGCTGGAGATGATGCTCCA
AGGGCAGTATTCCCTAGTATTGTTGGTAGGCCTCGACACACTGGAGTCAT
GGTTGGAATGGGGCAGAAGGATGCCTATGTTGGTGATGAGGCCCAATCGA
AAAGAGGTATTCTTACTTTGAAATACCCAATTGAGCACGGTATTGTAAGC
AACTGGGATGATATGGAAAAGATCTGGCATCATACCTTCTACAACGAGCT
TCGTGTTGCTCCTGAAGAGCACCCAGTGCTTCTCACTGAGGCACCTCTTA
ACCCCAAGGCCAACAGAGAGAAGATGACCCAAATTATGTTTGANACTTTC
AATGTGCCAGCCATGTACGTTGCCATCCAGGCTGTTCTATCTCTTTATGC
CAGTGGTCGTACAACTGGTATTGTGCTGGATTCTGGTGATGGTGTGTCTC
ATACTGTACCAATTT
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