DN617542

Overview
NameDN617542
Unique NameDN617542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN617542 vs. ExPASy Swiss-Prot
Match: DRL9_ARATH (Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 62/221 (28.05%), Postives = 95/221 (42.99%), Query Frame = 2 
Query:    2 LPSPLKQCFAYCALFPKDYLIVKEQLVLLWMAQG-FLGLSIDNQCPEDVGHEYFMSLLSRSFFQDAEYDEWGNIIRCKIHDLMHDLAESVAGTECAKVKLDARNVNERTHHISCVSGFDSSL-------EFPTALLRAKNLRT----FLSTVYSSSDRQLNESYCNKIVSSFKCLRTLNLSNSEIE--TVPSLIGKLKHLRYFNLSHNADIKSLPDSVSRL 622
            LPS LK CF Y A FP+DY I  E L   W A+  F     D +   DVG  Y   L+ R+        +      C +HD+M          E   +K    N  + T +    + F S++       ++PT L   K++       L  V   S      S+     +  + LR L+L  ++++   + S IGKL HLRY +L + A++  +P S+  L
Sbjct:  424 LPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEEIFQPRHYDGEIIRDVGDVYIEELVRRNMVISERDVKTSRFETCHLHDMMR---------EVCLLKAKEENFLQITSNPPSTANFQSTVTSRRLVYQYPTTLHVEKDINNPKLRSLVVVTLGSWNMAGSSF-----TRLELLRVLDLVQAKLKGGKLASCIGKLIHLRYLSLEY-AEVTHIPYSLGNL 629
The following BLAST results are available for this feature:
BLAST of DN617542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DRL9_ARATH6.927e-1128.05Probable disease resistance protein At1g58602 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617542 ID=DN617542; Name=DN617542; organism=Citrus sinensis; type=EST; length=632bp
TCTGCCATCACCATTGAAACAGTGCTTTGCTTACTGTGCATTGTTTCCCA
AAGATTATCTAATAGTGAAGGAGCAACTGGTTTTACTTTGGATGGCACAA
GGGTTTCTTGGGCTATCAATCGACAACCAATGTCCAGAAGATGTTGGTCA
TGAGTATTTTATGAGTTTGCTTTCGAGGTCATTTTTTCAAGATGCAGAAT
ATGATGAATGGGGAAATATAATCAGATGCAAGATTCATGATCTCATGCAT
GATCTAGCAGAGTCAGTTGCTGGAACTGAGTGTGCCAAGGTGAAACTGGA
TGCAAGAAATGTTAATGAAAGGACTCATCACATTTCATGTGTTTCTGGTT
TCGATTCATCACTGGAATTTCCAACTGCATTGCTTAGAGCTAAGAATCTA
AGAACCTTTCTTTCGACAGTTTATTCTTCATCTGACAGGCAACTAAATGA
GTCCTACTGTAACAAAATCGTGTCTAGTTTTAAGTGTTTGCGAACGTTAA
ATTTGAGTAATTCGGAGATTGAGACAGTTCCAAGTTTGATTGGGAAGCTG
AAGCACCTGCGATATTTCAACCTTTCTCATAATGCTGATATTAAAAGCCT
TCCTGACTCTGTGTCAAGATTGTTGAATCTCC
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