DN617540

Overview
NameDN617540
Unique NameDN617540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617540_ssr107 microsatellite DN617540_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9442 contig Csv1_Contig9442:9..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617540 vs. ExPASy Swiss-Prot
Match: MED10_DROME (Mediator of RNA polymerase II transcription subunit 10 OS=Drosophila melanogaster GN=MED10 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.922e-14
Identity = 45/114 (39.47%), Postives = 68/114 (59.65%), Query Frame = 1 
Query:  304 LHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKL-SEKCNIQVPTEVL-NLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYREIRANS 639
            + Q+ + VS F    Q  L Q++NSLV+ L  + KL S+  ++ VP EV  + ID  KNP  +T+D +   +AKN+  KGK +  K  + +LL EL +TFP+E+  YR  R +S
Sbjct:   19 VRQIRIIVSDFQPQGQNVLNQKINSLVTGLQEIDKLRSQVQDVYVPFEVFFDYIDQDKNPQLYTKDCVEKALAKNEEVKGKIEGLKKFKTNLLLELYKTFPNEMNNYRAYRKDS 132
[Close]
BLAST of DN617540 vs. ExPASy Swiss-Prot
Match: MED10_DICDI (Putative mediator of RNA polymerase II transcription subunit 10 OS=Dictyostelium discoideum GN=med10 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 32/124 (25.81%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  253 KQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKSLRKHLLDELEQTFPDEVEAYR 621
            KQ    ++ +V++ +  L +  + V  F   SQ  L  +LN +++  + +       N +++P E+  +ID  KNPD + ++ + +C++ N+ TKGK ++ K+ +K L   + ++F  E   Y+
Sbjct:   48 KQEHLPLLQTVEELVEELRRSLIVVEEFQTPSQQLLFDKLNKIINLYEKIESNRHIVNDVEIPLEIFRVIDQSKNPDLYVKETLQNCLSANEKTKGKIESIKNFKKELESHISESFASEYAEYK 171
The following BLAST results are available for this feature:
BLAST of DN617540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MED10_DROME3.922e-1439.47Mediator of RNA polymerase II transcription subuni... [more]
MED10_DICDI1.395e-1125.81Putative mediator of RNA polymerase II transcripti... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617540 ID=DN617540; Name=DN617540; organism=Citrus sinensis; type=EST; length=731bp
CTAAACAGCGATTCGCAGAAGTTTTGGGGTCCTGAAGTTTCAACCCAATC
GATGATTACTTGAATATTGACTAGAAAGAAAATAAACAGGGCAAAATTCG
GACTCTGAAGAAGAAGAAAACTGTAATTACAGTTTCTTGATACGAGAGAA
AGAAAGATGGATGGACCGGTGGGGGGCAGCAGAGCAAGTGGTGGCAATGG
AATGGTGAGCAATCAAGCAAACGATACAACAACTGTGGCAGCTGACGATC
CGAAGCAGAACTTGAACCAGGTTATTAATTCAGTTCAGAAGACTCTTGGG
CTCCTACATCAACTCTACCTTACCGTATCTTCCTTCAATGCTGCCTCCCA
GCTCCCTCTCCTACAGAGACTCAATTCTCTTGTTTCGGAGCTTGACAACA
TGGTTAAATTGTCTGAGAAGTGCAATATTCAAGTGCCCACGGAAGTGCTT
AATTTGATTGATGACGGAAAAAATCCTGATGAATTCACAAGGGATGTTAT
AAACAGCTGCATTGCTAAAAACCAAGTCACCAAAGGAAAAACTGATGCTT
TCAAGAGTTTACGAAAGCATCTTTTGGACGAACTTGAGCAGACATTTCCA
GATGAAGTTGAAGCATATAGAGAGATACGTGCAAATTCTGCTGCTGAAGC
AAAGCGTCTTGCTCAATCACAAAGTATGTTACCAAATGGAGATGTGAAAG
TTAAATCTGAGCTTTAAATGTCAGTTTCATG
back to top