DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_HELVI (V-type proton ATPase subunit B OS=Heliothis virescens GN=VHA55 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.481e-63
Identity = 121/157 (77.07%), Postives = 133/157 (84.71%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            Y+TV+GV GPLVILD VK PK+ EIV +RL DGT+R GQVLEV G KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   30 YKTVSGVNGPLVILDDVKFPKFSEIVQLRLADGTLRSGQVLEVSGTKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIA 186          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_MANSE (V-type proton ATPase subunit B OS=Manduca sexta GN=VHA55 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.300e-63
Identity = 120/159 (75.47%), Postives = 134/159 (84.28%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y+TV+GV GPLVILD+VK PK+ EIV ++L DGT R GQVLEV G KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGR+FNGSGKPID GPPIL E +LDI G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   28 LTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTHRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIA 186          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_DICDI (V-type proton ATPase subunit B OS=Dictyostelium discoideum GN=vatB PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.765e-62
Identity = 114/159 (71.70%), Postives = 132/159 (83.02%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            ++YRTVT V GPLVILD ++GPK+ EIV + LGDGT R+GQVLE+ G++AVVQVFEGT GID K T  +F+G++LK PVS D LGRIFNGSGKP+D GP +L E YLDI G  INPS R YP+EMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   21 LDYRTVTAVNGPLVILDNIRGPKFSEIVTLTLGDGTQRKGQVLEIQGKRAVVQVFEGTIGIDAKHTRCEFSGDILKMPVSEDSLGRIFNGSGKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAIDTMNSIARGQKIPIFSAAGLPHNEIA 179          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_YEAST (V-type proton ATPase subunit B OS=Saccharomyces cerevisiae GN=VMA2 PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 6.223e-62
Identity = 119/175 (68.00%), Postives = 143/175 (81.71%), Query Frame = 1
Query:   88 AQNNVDMEEG-TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            A N   +E+G  ++  + Y TV+GV GPLVIL+KVK P+Y EIVN+ L DGT+R+GQVLE+ G++A+VQVFEGTSGID K TTV+FTGE L+ PVS DMLGRIF+GSG+PIDNGP +  E YLDI+GS INP  R YPEEMI TG+S ID MNSIARGQKIP+FSA+GLPHNEIA
Sbjct:   10 AINKKAVEQGFNVKPRLNYNTVSGVNGPLVILEKVKFPRYNEIVNLTLPDGTVRQGQVLEIRGDRAIVQVFEGTSGIDVKKTTVEFTGESLRIPVSEDMLGRIFDGSGRPIDNGPKVFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIA 184          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_RAT (V-type proton ATPase subunit B, brain isoform OS=Rattus norvegicus GN=Atp6v1b2 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.986e-61
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIA 203          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_PONAB (V-type proton ATPase subunit B, brain isoform OS=Pongo abelii GN=ATP6V1B2 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.986e-61
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIA 203          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_MOUSE (V-type proton ATPase subunit B, brain isoform OS=Mus musculus GN=Atp6v1b2 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 8.986e-61
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIA 203          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_HUMAN (V-type proton ATPase subunit B, brain isoform OS=Homo sapiens GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 8.986e-61
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIA 203          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_BOVIN (V-type proton ATPase subunit B, brain isoform OS=Bos taurus GN=ATP6V1B2 PE=1 SV=3)

HSP 1 Score: 233.032 bits (593), Expect = 8.986e-61
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y+TV+GV GPLVILD VK P+Y EIV++ L DGT R GQVLEV G KAVVQVFEGTSGID K T+ +FTG++L+TPVS DMLGR+FNGSGKPID GP +L E +LDI G  INP  R YPEEMIQTGIS ID MNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   45 LTYKTVSGVNGPLVILDHVKFPRYAEIVHLTLPDGTKRSGQVLEVSGSKAVVQVFEGTSGIDAKKTSCEFTGDILRTPVSEDMLGRVFNGSGKPIDRGPVVLAEDFLDIMGQPINPQCRIYPEEMIQTGISAIDGMNSIARGQKIPIFSAAGLPHNEIA 203          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CAEBR (Probable V-type proton ATPase subunit B OS=Caenorhabditis briggsae GN=vha-12 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.824e-60
Identity = 116/157 (73.89%), Postives = 131/157 (83.44%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            Y+TV+GV GPLVIL+ VK P++ EIV I L DG+ R GQVLE+   KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGRIFNGSGKPID GPP+L E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   29 YQTVSGVNGPLVILNDVKFPQFSEIVKITLPDGSQRSGQVLEIAKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIA 185          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_HELVI1.481e-6377.07V-type proton ATPase subunit B OS=Heliothis viresc... [more]
VATB_MANSE3.300e-6375.47V-type proton ATPase subunit B OS=Manduca sexta GN... [more]
VATB_DICDI4.765e-6271.70V-type proton ATPase subunit B OS=Dictyostelium di... [more]
VATB_YEAST6.223e-6268.00V-type proton ATPase subunit B OS=Saccharomyces ce... [more]
VATB2_RAT8.986e-6173.58V-type proton ATPase subunit B, brain isoform OS=R... [more]
VATB2_PONAB8.986e-6173.58V-type proton ATPase subunit B, brain isoform OS=P... [more]
VATB2_MOUSE8.986e-6173.58V-type proton ATPase subunit B, brain isoform OS=M... [more]
VATB2_HUMAN8.986e-6173.58V-type proton ATPase subunit B, brain isoform OS=H... [more]
VATB2_BOVIN8.986e-6173.58V-type proton ATPase subunit B, brain isoform OS=B... [more]
VATB_CAEBR5.824e-6073.89Probable V-type proton ATPase subunit B OS=Caenorh... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
back to top