DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_HALS3 (V-type ATP synthase beta chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=atpB PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.081e-41
Identity = 83/158 (52.53%), Postives = 113/158 (71.52%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+T V+GPLV ++  +   Y EIV I   +G ++RGQVLE       +QVFEGT G+  K  +V+F GE LK PV+ D+LGR+ +GSG PID GP I+P+  +DI G +INP  R YPEE IQTG+S ID MN++ RGQK+P+FS +GLPH+++A
Sbjct:    3 EYQTITEVSGPLVYVETDEPIGYDEIVEIETPNGDVKRGQVLESSDGFVAIQVFEGTEGV-GKDASVRFLGETLKMPVTEDLLGRVLDGSGNPIDGGPDIVPDDRVDIVGEAINPHAREYPEEFIQTGVSGIDGMNTLVRGQKLPIFSGSGLPHSDLA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_HALLT (V-type ATP synthase beta chain OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=atpB PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.718e-41
Identity = 82/158 (51.90%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+T ++GPLV  +  +   Y EIV I    G   RGQVLE       +QVFEGTSGID    +V+F GE +K PV+ D+LGR+ +GSG+PID+GP I+PE   DI G++INP  R YPEE I+TG+S ID MN++ RGQK+P+FS++G PH+++A
Sbjct:    3 EYQTITEISGPLVYAEVDEAIGYDEIVEIETAQGETLRGQVLESSEGVVAIQVFEGTSGIDQN-ASVRFLGETMKMPVTEDLLGRVLDGSGRPIDDGPEIVPEERQDIVGAAINPYSREYPEEFIETGVSAIDGMNTLVRGQKLPIFSSSGQPHSQLA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_HALWD (V-type ATP synthase beta chain OS=Haloquadratum walsbyi (strain DSM 16790) GN=atpB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.550e-41
Identity = 82/158 (51.90%), Postives = 114/158 (72.15%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+TVT ++GPL+  +  +   Y EIV I   +G ++RGQVLE +     +QVFEGTSGID    +V+F+GE LK  V+ D+LGR+ +GSG+PID GP IL +   +I G++INP  R YPEE IQTG++ +D MN++ RGQK+P+FS +GLPHNE+A
Sbjct:    3 EYQTVTEISGPLIYAEVDEPIGYDEIVEIETPNGDIKRGQVLESEDGLVAIQVFEGTSGIDTN-ASVRFSGETLKMKVTEDLLGRVLDGSGQPIDGGPEILADERREIVGAAINPYAREYPEEFIQTGVAAVDGMNTLVRGQKLPIFSGSGLPHNELA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOD6 (V-type ATP synthase beta chain OS=Clostridium difficile (strain 630) GN=atpB PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.550e-41
Identity = 79/158 (50.00%), Postives = 119/158 (75.32%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+++  VAGPL++++ V+G K+ E+  I L +G +RR +VLEV+G+ A+VQ+FE ++GI+   + V+F G+ L   VS D+LGR+F+G G+PID GP I+P+  LDI+G+ INP+ R YP E IQTG+S ID +N++ RGQK+P+FS +GLPH  +A
Sbjct:    4 EYKSIQEVAGPLMLINGVEGVKFDELGEIELSNGEIRRCKVLEVNGDTALVQLFESSTGINLAESKVRFLGKSLDFGVSPDILGRVFSGMGRPIDGGPEIIPDKRLDINGAPINPAARDYPAEFIQTGVSAIDGLNTLVRGQKLPIFSGSGLPHANLA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THET8 (V-type ATP synthase beta chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=atpB PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 2.301e-40
Identity = 85/158 (53.80%), Postives = 110/158 (69.62%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY  +T ++GPL+ ++  K   Y  IV+I+ G G +R GQV+EV  E AV+QVFE T+G+D   T+V    +V +  VS +MLGR FNG GKPID  PPI PE  L I+G  +NP  R  PE+ IQTGISTIDVMN++ RGQK+P+FS +GLP NEIA
Sbjct:    7 EYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIA 164          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THET2 (V-type ATP synthase beta chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=atpB PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.301e-40
Identity = 85/158 (53.80%), Postives = 110/158 (69.62%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY  +T ++GPL+ ++  K   Y  IV+I+ G G +R GQV+EV  E AV+QVFE T+G+D   T+V    +V +  VS +MLGR FNG GKPID  PPI PE  L I+G  +NP  R  PE+ IQTGISTIDVMN++ RGQK+P+FS +GLP NEIA
Sbjct:    7 EYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGSGLPANEIA 164          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THEAC (V-type ATP synthase beta chain OS=Thermoplasma acidophilum GN=atpB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.005e-40
Identity = 76/159 (47.80%), Postives = 114/159 (71.70%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y++V+ ++GPL+ ++ V    Y E+V+I L +G  R+GQVL+     A+VQ+F  T+GI  + TTV+F GE  + P+S DMLGR+FNG G+PID GP I+ +  ++I+ ++INP  R  P E I+TGIS ID MN++ RGQK+P+FS +GLPHN++A
Sbjct:    4 LAYKSVSQISGPLLFVENVPNAAYNEMVDIELENGETRQGQVLDTRKGLAIVQIFGATTGIGTQGTTVKFRGETARLPISEDMLGRVFNGIGEPIDGGPEIIAKERMEITSNAINPYSREEPSEFIETGISAIDGMNTLVRGQKLPIFSGSGLPHNQLA 162          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_DICT6 (V-type ATP synthase beta chain OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=atpB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.005e-40
Identity = 79/158 (50.00%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY +V+ ++GPLV+++ ++  KY E+V ++L +G +R+GQVLE     A+VQ+F  T  +  K   V+F G VL+  +S ++LGR F+G G+P D GP I+P+  +DI+GS INP  R YP+E IQTGIS ID MN+I RGQKIP+FS AGLPH  +A
Sbjct:    4 EYTSVSKISGPLVLVENIENVKYGEVVEVKLANGEIRQGQVLEAQEGAALVQMFASTQDLSLKGMRVKFLGHVLEINLSPEILGRTFDGLGRPRDGGPEIIPQKRMDINGSPINPYSRAYPQEFIQTGISAIDGMNTIVRGQKIPIFSGAGLPHATLA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_DICTD (V-type ATP synthase beta chain OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=atpB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.925e-40
Identity = 78/158 (49.37%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY +V+ ++GPLV+++ ++  KY E+V ++L +G +R+GQVLE     A+VQ+F  T  +  K   ++F G VL+  +S ++LGR F+G G+P D GP I+P+  +DI+GS INP  R YP+E IQTGIS ID MN+I RGQKIP+FS AGLPH  +A
Sbjct:    4 EYTSVSKISGPLVLVENIENVKYGEVVEVKLANGEIRQGQVLEAQEGAALVQMFASTQDLSLKGMRIKFLGHVLEINLSPEILGRTFDGLGRPRDGGPEIIPQKRMDINGSPINPYSRAYPQEFIQTGISAIDGMNTIVRGQKIPIFSGAGLPHATLA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THEVO (V-type ATP synthase beta chain OS=Thermoplasma volcanium GN=atpB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.695e-40
Identity = 76/159 (47.80%), Postives = 113/159 (71.07%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y++V+ ++GPL+ ++ V    Y E+V+I L +G  R+GQVL+     A+VQ+F  T+GI  + T V+F GE  + P+S DMLGR+FNG G+PID GP IL +  ++I+ ++INP  R  P E I+TGIS ID MN++ RGQK+P+FS +GLPHN++A
Sbjct:    4 LTYKSVSEISGPLLFVENVPNAAYNEMVDIELDNGETRQGQVLDTRKGLAIVQIFGATTGIGTEGTRVKFRGETARLPISEDMLGRVFNGIGEPIDGGPEILAKERMEITSNAINPYSREEPSEFIETGISAIDGMNTLVRGQKLPIFSGSGLPHNQLA 162          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_HALS32.081e-4152.53V-type ATP synthase beta chain OS=Halobacterium sa... [more]
VATB_HALLT2.718e-4151.90V-type ATP synthase beta chain OS=Halorubrum lacus... [more]
VATB_HALWD3.550e-4151.90V-type ATP synthase beta chain OS=Haloquadratum wa... [more]
VATB_CLOD63.550e-4150.00V-type ATP synthase beta chain OS=Clostridium diff... [more]
VATB_THET82.301e-4053.80V-type ATP synthase beta chain OS=Thermus thermoph... [more]
VATB_THET22.301e-4053.80V-type ATP synthase beta chain OS=Thermus thermoph... [more]
VATB_THEAC3.005e-4047.80V-type ATP synthase beta chain OS=Thermoplasma aci... [more]
VATB_DICT63.005e-4050.00V-type ATP synthase beta chain OS=Dictyoglomus the... [more]
VATB_DICTD3.925e-4049.37V-type ATP synthase beta chain OS=Dictyoglomus tur... [more]
VATB_THEVO6.695e-4047.80V-type ATP synthase beta chain OS=Thermoplasma vol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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