DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_NITMS (V-type ATP synthase beta chain OS=Nitrosopumilus maritimus (strain SCM1) GN=atpB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.813e-38
Identity = 73/164 (44.51%), Postives = 112/164 (68.29%), Query Frame = 1
Query:  118 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            T E  ++Y  +  + GPLVI+D V+   + E+V +   DG  R G+VLEV   KA+VQVFEGT+G+    T  +F G+V++ PVS ++LGR+F+G G+P D  P  + + ++DI+G  +NP +R YP++ IQTG+S ID M ++ RGQK+P+FS +G+ HN +A
Sbjct:    2 TAEGGVQYSKIAEIKGPLVIVDDVENAAFDELVEVETKDGERRLGKVLEVGNGKAIVQVFEGTTGLSIAATNAKFVGKVMEMPVSREVLGRVFDGLGRPKDGLPDPIADQFIDINGEPMNPEQREYPKDFIQTGVSVIDGMITLVRGQKLPIFSGSGMSHNLLA 165          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_IGNH4 (V-type ATP synthase beta chain OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=atpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY +V+ + G L++++ V    Y E+V+I +  G  RRG VLE     AVVQVFEGT+GI    T V+FTG +L+  VS DMLGRI N  G+PID G PI      ++ G  INP  R YP+E I+TGIS ID MNS+ RGQK+P+FS +GLPHN++A
Sbjct:   10 EYESVSEIRGQLLVVEGVSDAGYGELVDIEMPSGEKRRGIVLETGKGLAVVQVFEGTTGISPAGTKVRFTGRILEMGVSEDMLGRIMNALGEPIDGGAPIKAVEKRNVWGEPINPYAREYPDEFIETGISAIDGMNSLVRGQKLPIFSGSGLPHNKLA 167          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CENSY (V-type ATP synthase beta chain OS=Cenarchaeum symbiosum GN=atpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.266e-38
Identity = 72/164 (43.90%), Postives = 114/164 (69.51%), Query Frame = 1
Query:  118 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            T+E  ++Y  +  + GPLVI+D V+   + E+V I   +G  R G+VLE+   KA+VQVFEGT+G+    T  +F G+V++ PVS ++LGRIF+G G+P D  P  + + ++DI+G ++NP +R YP++ IQTG+S ID + ++ RGQK+P+FS +G+ HN +A
Sbjct:    2 TVEGGVQYSRIAEIKGPLVIVDGVENAAFDELVEIETNEGGRRLGKVLEIGNGKAIVQVFEGTTGLSVAGTNARFVGKVMEMPVSREVLGRIFDGLGRPKDKLPDPIADKFIDINGEAMNPEQREYPKDFIQTGVSAIDGIMTLVRGQKLPIFSGSGMSHNILA 165          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_SULAC (V-type ATP synthase beta chain OS=Sulfolobus acidocaldarius GN=atpB PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.396e-37
Identity = 75/164 (45.73%), Postives = 110/164 (67.07%), Query Frame = 1
Query:  118 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            TL    EY +++ + GPL+ ++ V    Y E++ + + DG+ RRG V++     A+VQVFEGT+G+    + V+F G  L+  +S +MLGRIF   G+P+DNGP +L     DI+GS +NPS R YPEE IQTG+S ID + S+ RGQK+P+FS +GLP N++A
Sbjct:    3 TLMNIREYNSISMIKGPLMAIEGVTDAAYNELIEVEMPDGSKRRGIVVDSQSGVAIVQVFEGTTGVSPTQSKVRFLGRGLEVKISEEMLGRIFTPLGEPLDNGPQVLSGEKRDINGSPLNPSVREYPEEFIQTGVSAIDGLTSLLRGQKLPIFSGSGLPANQLA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_SULTO (V-type ATP synthase beta chain OS=Sulfolobus tokodaii GN=atpB PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.305e-37
Identity = 76/158 (48.10%), Postives = 105/158 (66.46%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY  ++ + GPL+ +  V    Y E+V I + DG+ RRG V++       VQVFEGT+GI    + V+F G  L+  +S +MLGRIFN  G+P+DNGPP++     +I+G  INP+ R YPEE IQTGIS ID +NS+ RGQK+P+FS +GLP N +A
Sbjct:    8 EYSNISMIKGPLIAVQGVSDAAYNELVEIEMPDGSKRRGLVVDSQMGVTFVQVFEGTTGISPTGSKVRFLGRGLEVKISEEMLGRIFNPLGEPLDNGPPVIGGEKRNINGDPINPATREYPEEFIQTGISAIDGLNSLLRGQKLPIFSGSGLPANTLA 165          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_DEIGD (V-type ATP synthase beta chain OS=Deinococcus geothermalis (strain DSM 11300) GN=atpB PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.928e-37
Identity = 77/158 (48.73%), Postives = 105/158 (66.46%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY  V+ ++GPL+ ++      Y  IV I+ G G  R GQV+ V  E AV+QVFE T G+D    +V    +V +  VS +M+GR F+G G+PID  PP++ E  L+I+G  +NP+ R  PEE IQTGISTIDV  S+ RGQK+P+FS +GLPHNE+A
Sbjct:    8 EYNDVSYISGPLLFVNAASDLAYGAIVEIKDGTGRTRGGQVISVSDENAVIQVFEETRGLDLATASVSLVEDVARLGVSREMIGRRFDGLGRPIDGLPPVVAEKRLNINGEPMNPAARAKPEEFIQTGISTIDVNTSLIRGQKLPIFSGSGLPHNELA 165          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_GOSHI (V-type proton ATPase subunit B 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.016e-36
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = 1
Query:  385 GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIP FSAAGLPHNEIA
Sbjct:    1 GRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPFFSAAGLPHNEIA 75          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_CLOTE (V-type ATP synthase beta chain 2 OS=Clostridium tetani GN=atpB2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.016e-36
Identity = 73/158 (46.20%), Postives = 109/158 (68.99%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY  +  V GPLV+L +V+G  Y EIV I++ +G  ++G+V+++ G+KAV+QVFE T+G+  + TT+ FTG+ L+  +S ++LGR FNG G+ ID    I      +++G  INP  R YP   IQTGIS+ID + ++ RGQK+P+FS  G+PHNE+A
Sbjct:    4 EYLLLDRVQGPLVVLSEVEGVAYDEIVEIKIANGETKKGRVVQLQGDKAVIQVFESTTGMSLQNTTISFTGKPLEISLSREVLGREFNGIGEAIDGRGEIYSLKKYNVNGRPINPVARKYPRNFIQTGISSIDCLTTLIRGQKLPIFSGNGMPHNELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METS5 (V-type ATP synthase beta chain OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=atpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 75/158 (47.47%), Postives = 105/158 (66.46%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY  ++ + GPL+++  V    Y E+V + + +G  RRG V++     ++VQVFEGT GI    TTV+F G  L+  +S +MLGRIFN  G P+DNGP ++     DI+G  +NP+ R YPEE IQTGIS ID +NS+ RGQK+P+FS +GLP N +A
Sbjct:    9 EYSNISMIKGPLLMVQGVADSAYNELVEVEMPNGERRRGIVVDSQKGISIVQVFEGTRGISPVGTTVRFLGRGLEVKISEEMLGRIFNPLGDPLDNGPMVIKGEKRDINGEPLNPAIRDYPEEFIQTGISAIDGLNSLLRGQKLPIFSGSGLPANILA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_COPPD (V-type ATP synthase beta chain OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=atpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/158 (48.10%), Postives = 106/158 (67.09%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            E+R+++ V GPLV ++ V    Y E+V  +L +G +R GQVLE     ++VQVFEGT G+  K TT +F G  L   VS  +LGR+F+G G+P+D  P    + Y+DI+G+ +NP  R YP E IQTGIS ID MN++ RGQK+P+FS +GLPH  +A
Sbjct:    4 EFRSISEVNGPLVFVEGVSDAAYGELVEFQL-NGEIRHGQVLETTDRFSLVQVFEGTQGLTPKTTTARFLGRGLTFGVSEGILGRVFDGLGEPLDGKPQPFVDKYVDINGAPMNPVSREYPAEFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHARLA 160          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_NITMS2.813e-3844.51V-type ATP synthase beta chain OS=Nitrosopumilus m... [more]
VATB_IGNH43.674e-3851.27V-type ATP synthase beta chain OS=Ignicoccus hospi... [more]
VATB_CENSY6.266e-3843.90V-type ATP synthase beta chain OS=Cenarchaeum symb... [more]
VATB_SULAC1.396e-3745.73V-type ATP synthase beta chain OS=Sulfolobus acido... [more]
VATB_SULTO5.305e-3748.10V-type ATP synthase beta chain OS=Sulfolobus tokod... [more]
VATB_DEIGD6.928e-3748.73V-type ATP synthase beta chain OS=Deinococcus geot... [more]
VATB2_GOSHI2.016e-3698.67V-type proton ATPase subunit B 2 (Fragment) OS=Gos... [more]
VATB2_CLOTE2.016e-3646.20V-type ATP synthase beta chain 2 OS=Clostridium te... [more]
VATB_METS55.865e-3647.47V-type ATP synthase beta chain OS=Metallosphaera s... [more]
VATB_COPPD5.865e-3648.10V-type ATP synthase beta chain OS=Coprothermobacte... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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