DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_ANADF (V-type ATP synthase beta chain OS=Anaeromyxobacter sp. (strain Fw109-5) GN=atpB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.159e-30
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 1
Query:  127 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            V    R    +AGPL+ L+ V   +  E+V IR+  G  RRGQ++E+ G +  VQV E T G+      V  TGEV    VS  MLGR+ +G G+P D  P  + EA L I G+++N + R  P + I+TG+S ID +N++ RGQK+P+FS AGLP   +A
Sbjct:    4 VTRRVRGADAIAGPLLFLEGVPRARLGELVRIRMAGGEERRGQIIELSGARVAVQVLEETRGLAPARAEVTLTGEVATLAVSRGMLGRVLDGLGRPTDGLPAPIAEARLPIHGAALNVTRREKPADFIETGVSAIDGLNTLVRGQKLPVFSCAGLPAGRLA 164          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_TREPA (V-type ATP synthase beta chain 2 OS=Treponema pallidum GN=atpB2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.020e-28
Identity = 61/157 (38.85%), Postives = 96/157 (61.15%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            YR ++ + GP+V+  + +G  Y EI  IR   G +R G+++++  E  ++QVF  T G+      ++F    ++  V   ++GR+F+G G+PID  P +L     +++G  INP  R YP + IQTGIS ID MN++ RGQK+P+FS  GL HN +A
Sbjct:    6 YRGLSSIDGPIVVAKRREGAFYGEITAIRDRFGALRTGRIIDLSQECCLIQVFGSTLGLSLDGACLEFLDVPMQLRVCEGLMGRVFDGLGRPIDGFPEVLSSQLRNVNGYPINPYARVYPRDFIQTGISAIDGMNTLIRGQKLPIFSGNGLAHNRLA 162          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METTL (V-type ATP synthase beta chain (Fragment) OS=Methanococcus thermolithotrophicus GN=atpB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.678e-28
Identity = 58/94 (61.70%), Postives = 71/94 (75.53%), Query Frame = 1
Query:  328 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            T V+FTGE  K  VSL+MLGRIFNG+GKPID GP I+PE  LDI+G  +NP  R  P   +QTGISTID  N++ RGQK+P+FS +GLPHN +A
Sbjct:    5 TKVRFTGETAKIGVSLEMLGRIFNGAGKPIDGGPEIIPEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKLPIFSGSGLPHNTLA 98          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_ANASK (V-type ATP synthase beta chain OS=Anaeromyxobacter sp. (strain K) GN=atpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.810e-27
Identity = 68/168 (40.48%), Postives = 98/168 (58.33%), Query Frame = 1
Query:  127 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-------GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            V    R   G+AGPL+ L+ V   +  E+V IR G+          R GQV+ +  ++  VQV E T G+      V  TG+V +  VS  MLGR+ +G G+P D  PP +PEA   I G+++N + R  P + I+TG+S ID MN++ RGQK+P+FS AGLP + +A
Sbjct:    4 VTRRIRGALGIAGPLLFLEGVPRARLGEVVRIR-GEPEAHGRAAEERSGQVIALSRDRIAVQVLEETRGLAPARAEVTLTGQVARLGVSRGMLGRVLDGLGRPADGLPPPVPEARPAIHGAALNVTRREKPSDFIETGVSAIDGMNTLVRGQKLPVFSCAGLPASRLA 170          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_ANAD2 (V-type ATP synthase beta chain OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=atpB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.810e-27
Identity = 68/168 (40.48%), Postives = 98/168 (58.33%), Query Frame = 1
Query:  127 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-------GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            V    R   G+AGPL+ L+ V   +  E+V IR G+          R GQV+ +  ++  VQV E T G+      V  TG+V +  VS  MLGR+ +G G+P D  PP +PEA   I G+++N + R  P + I+TG+S ID MN++ RGQK+P+FS AGLP + +A
Sbjct:    4 VTRRIRGALGIAGPLLFLEGVPRARLGEVVRIR-GEPEANGRAAEERSGQVIALSRDRIAVQVLEETRGLAPARAEVTLTGQVARLGVSRGMLGRVLDGLGRPADGLPPPVPEARPAIHGAALNVTRREKPSDFIETGVSAIDGMNTLVRGQKLPVFSCAGLPASRLA 170          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_ANADE (V-type ATP synthase beta chain OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=atpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.500e-27
Identity = 67/168 (39.88%), Postives = 99/168 (58.93%), Query Frame = 1
Query:  127 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGD-------GTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            V    R   G+AGPL+ L+ V   +  E+V IR G+          R GQV+ +  ++  VQV E T G+    + V  TG+V +  V+  MLGR+ +G G+P D  PP +PEA   I G+++N + R  P + I+TG+S ID MN++ RGQK+P+FS AGLP + +A
Sbjct:    4 VTRRIRGALGIAGPLLFLEGVPRARLGEVVRIR-GEPEASGRAAEERSGQVIALSRDRIAVQVLEETRGLAPARSEVTLTGQVARLGVARGMLGRVLDGLGRPADGLPPPVPEARPAIHGAALNVTRREKPSDFIETGVSAIDGMNTLVRGQKLPVFSCAGLPASRLA 170          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_BORAP (V-type ATP synthase beta chain OS=Borrelia afzelii (strain PKo) GN=atpB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.150e-24
Identity = 58/156 (37.18%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  +AG ++ +   +G KY E+  ++  D T    +V+++D EK  +QV+ GT G+      ++F G  ++   S ++LGRIF+GSG P D GP  L +  ++I G S NP++R  P  MI+TG+  IDV N++   QK+P+FS +G P+NE+
Sbjct:    5 YSKIESIAGNVITVT-AQGIKYGELAIVKAKD-TSSLAEVIKLDREKVSLQVYGGTRGVSTS-DEIKFLGHTMQVSFSDNLLGRIFDGSGNPRDGGPS-LDDNLIEIGGPSANPTKRIVPRNMIRTGLPMIDVFNTLVESQKLPIFSVSGEPYNEL 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_BORBZ (V-type ATP synthase beta chain OS=Borrelia burgdorferi (strain ZS7) GN=atpB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.784e-24
Identity = 58/156 (37.18%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  +AG ++ +   +G KY E+  ++  D T    +V+++D EK  +QV+ GT G+      ++F G  ++   S ++LGRIF+GSG P D GP  L +  ++I G S NP++R  P  MI+TG+  IDV N++   QK+P+FS +G P+NE+
Sbjct:    5 YSKIESIAGNVITVT-AQGIKYGELAIVKAKD-TSSLAEVIKLDREKVSLQVYGGTRGVSTS-DEIKFLGHSMQVSFSDNLLGRIFDGSGNPRDGGPS-LDDNLIEIGGPSANPTKRIVPRNMIRTGLPMIDVFNTLVESQKLPIFSVSGEPYNEL 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_BORBU (V-type ATP synthase beta chain OS=Borrelia burgdorferi GN=atpB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.784e-24
Identity = 58/156 (37.18%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  +AG ++ +   +G KY E+  ++  D T    +V+++D EK  +QV+ GT G+      ++F G  ++   S ++LGRIF+GSG P D GP  L +  ++I G S NP++R  P  MI+TG+  IDV N++   QK+P+FS +G P+NE+
Sbjct:    5 YSKIESIAGNVITVT-AQGIKYGELAIVKAKD-TSSLAEVIKLDREKVSLQVYGGTRGVSTS-DEIKFLGHSMQVSFSDNLLGRIFDGSGNPRDGGPS-LDDNLIEIGGPSANPTKRIVPRNMIRTGLPMIDVFNTLVESQKLPIFSVSGEPYNEL 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_BORGA (V-type ATP synthase beta chain OS=Borrelia garinii GN=atpB PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.498e-23
Identity = 59/156 (37.82%), Postives = 95/156 (60.90%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  +AG ++ +   +G KY E+  ++  D T    +V+++D EK  +QV+ GT GI      ++F G  ++   S ++LGRIF+GSG P D GP  L +  ++I G S NP++R  P  MI+TG+  IDV N++   QK+P+FS +G P+NE+
Sbjct:    5 YSKIECIAGNVITVT-AQGIKYGELAIVKAKD-TSSLAEVIKLDREKVSLQVYGGTRGISTS-DEIKFLGHSMQVSFSDNLLGRIFDGSGNPRDGGPS-LDDNLIEIGGPSANPAKRIVPRNMIRTGLPMIDVFNTLVESQKLPIFSVSGEPYNEL 156          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_ANADF2.159e-3042.24V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB2_TREPA2.020e-2838.85V-type ATP synthase beta chain 2 OS=Treponema pall... [more]
VATB_METTL7.678e-2861.70V-type ATP synthase beta chain (Fragment) OS=Metha... [more]
VATB_ANASK3.810e-2740.48V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB_ANAD23.810e-2740.48V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB_ANADE6.500e-2739.88V-type ATP synthase beta chain OS=Anaeromyxobacter... [more]
VATB_BORAP5.150e-2437.18V-type ATP synthase beta chain OS=Borrelia afzelii... [more]
VATB_BORBZ8.784e-2437.18V-type ATP synthase beta chain OS=Borrelia burgdor... [more]
VATB_BORBU8.784e-2437.18V-type ATP synthase beta chain OS=Borrelia burgdor... [more]
VATB_BORGA1.498e-2337.82V-type ATP synthase beta chain OS=Borrelia garinii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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