DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_BORHD (V-type ATP synthase beta chain OS=Borrelia hermsii (strain DAH) GN=atpB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.268e-22
Identity = 57/156 (36.54%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  + G ++ +   +  KY E+  ++  D T    +V+++D EK  +QV+ GT GI      V+F G  ++   S ++ GRIF+G+G P D GP  L +  ++I G S+NP++R  P  MI+TGI  IDV N++   QK+P+FS +G P+NE+
Sbjct:    5 YSKIESIVGNVITV-MAQNVKYGELAIVKSKD-TSSLAEVIKLDREKVSLQVYNGTIGISTA-DEVKFLGHPMQVTFSENLFGRIFDGAGNPKDGGPR-LEDNLIEIGGPSVNPAKRIVPRNMIRTGIPMIDVFNTLVESQKLPVFSVSGEPYNEL 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_BORT9 (V-type ATP synthase beta chain OS=Borrelia turicatae (strain 91E135) GN=atpB PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.164e-22
Identity = 57/156 (36.54%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  + G ++ +   +  KY E+  +R  D +    +V+++D +K  +QV+ GT GI      V+F G  ++   S ++LGRIF+G+G P D GP  L +  ++I G S NP++R  P  MI+TGI  IDV N++   QK+P+FS +G P+NE+
Sbjct:    5 YSKIESIVGNVITV-MAQNVKYGELAIVRSKDSSSL-AEVIKLDRDKVSLQVYNGTIGISTA-DEVKFLGHPMQVTFSENLLGRIFDGAGNPKDGGPR-LEDDLIEIGGPSANPAKRIVPRNMIRTGIPMIDVFNTLVESQKLPIFSVSGEPYNEL 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_TREDE (V-type ATP synthase beta chain OS=Treponema denticola GN=atpB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.222e-22
Identity = 58/156 (37.18%), Postives = 92/156 (58.97%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  + G ++ + K  G  Y E+  ++   G     +V +++G+   +QVF G  G+      V+F G+ ++   S D+LGRIFNGSG P D+GP  L +  + I G S+NPS+R     MI+TGI  IDV N++   QK+P+FS++G P+NE+
Sbjct:    5 YSKIESINGSVITV-KADGVSYGELAEVQTRFGASL-AEVNKLEGDLVSLQVFAGGRGVSTG-DEVRFLGKEMQVSYSEDLLGRIFNGSGDPRDSGPA-LKDNMIPIGGPSVNPSKRILANRMIRTGIPMIDVFNTLVVSQKLPIFSSSGEPYNEL 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB1_TREPA (V-type ATP synthase beta chain 1 OS=Treponema pallidum GN=atpB1 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.124e-21
Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  + G ++ + + KG  Y E+  ++   G     +V +++G+   +QVF G  GI    + V+F G  +    S  +LGRIFNGSG P D GP  L E  ++I G S+NP++R     MI+TGI  IDV N++   QK+P+FS++G P+NE+
Sbjct:    5 YEKIESINGSVITV-RAKGVHYGELARVKTAFGDSL-AEVNKLEGDVVSLQVFAGGRGISTG-SEVRFLGRGMLVSFSDYLLGRIFNGSGVPRDGGPA-LKEGRVEIGGPSVNPAKRVIARRMIRTGIPMIDVFNTLVVSQKLPIFSSSGEPYNEL 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLMU (V-type ATP synthase beta chain OS=Chlamydia muridarum GN=atpB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.329e-21
Identity = 59/156 (37.82%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D +K  +QVF GTSG+      V F G  ++      +LGR FNG+GKPIDN      E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +
Sbjct:    5 YTRITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDAKKVTLQVFGGTSGLSTGDKVV-FLGRPMEVVYGDSLLGRRFNGTGKPIDNEEICFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_PARUW (V-type ATP synthase beta chain OS=Protochlamydia amoebophila (strain UWE25) GN=atpB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.090e-21
Identity = 55/156 (35.26%), Postives = 85/156 (54.49%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +  + G L+ +   +G    E+  I L DG      VL +DG++  +QVF+ T GI      V F    ++      +LGR  +G+G PID GP ++ E+ +DI  +S NP +R  P +M++T I  IDV N + + QKIP+FS  G P+N +
Sbjct:    5 YDRINNMRGNLITIT-AEGVSLGELARIDLKDGRNIYASVLRIDGDQVTLQVFQTTRGISTS-DQVTFLNRQMQAVYGDTLLGRRLSGTGLPIDGGPQVIGES-IDIGSTSFNPVKRIVPRDMVRTNIPMIDVFNCLVKSQKIPIFSVPGEPYNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLTB (V-type ATP synthase beta chain OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=atpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D  K  +QVF GTSG+      + F G  ++      +LGR FNG+GKPID+      E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +
Sbjct:    5 YTKITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDARKVTLQVFGGTSGLSTGDKVI-FLGRPMEVIYGDSLLGRRFNGTGKPIDHEDECFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLT2 (V-type ATP synthase beta chain OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=atpB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.645e-20
Identity = 57/156 (36.54%), Postives = 83/156 (53.21%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D  K  +QVF GTSG+      + F G  ++      +LGR FNG+GKPID+      E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +
Sbjct:    5 YTKITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDARKVTLQVFGGTSGLSTGDKVI-FLGRPMEVIYGDSLLGRRFNGTGKPIDHEDECFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLTR (V-type ATP synthase beta chain OS=Chlamydia trachomatis GN=atpB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D  K  +QVF GTSG+      + F G  ++      +LGR FNG+GKPID       E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +
Sbjct:    5 YTKITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDARKVTLQVFGGTSGLSTGDKVI-FLGRPMEVIYGDSLLGRRFNGTGKPIDREDECFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLTA (V-type ATP synthase beta chain OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=atpB PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 57/156 (36.54%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G    E+V I   DG      VL  D  K  +QVF GTSG+      + F G  ++      +LGR FNG+GKPID       E  + I+  S NP  R  P EM++T I  ID+ N + + QKIP+FS++G  HN +
Sbjct:    5 YTKITDIKGNLITVE-AEGASLGELVQIERADGRSSYASVLRFDARKVTLQVFGGTSGLSTGDKVI-FLGRPMEVIYGDSLLGRRFNGTGKPIDREDECFGEP-IPITTPSFNPVCRIVPREMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNAL 157          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_BORHD1.268e-2236.54V-type ATP synthase beta chain OS=Borrelia hermsii... [more]
VATB_BORT92.164e-2236.54V-type ATP synthase beta chain OS=Borrelia turicat... [more]
VATB_TREDE8.222e-2237.18V-type ATP synthase beta chain OS=Treponema dentic... [more]
VATB1_TREPA3.124e-2137.18V-type ATP synthase beta chain 1 OS=Treponema pall... [more]
VATB_CHLMU5.329e-2137.82V-type ATP synthase beta chain OS=Chlamydia murida... [more]
VATB_PARUW9.090e-2135.26V-type ATP synthase beta chain OS=Protochlamydia a... [more]
VATB_CHLTB2.645e-2036.54V-type ATP synthase beta chain OS=Chlamydia tracho... [more]
VATB_CHLT22.645e-2036.54V-type ATP synthase beta chain OS=Chlamydia tracho... [more]
VATB_CHLTR3.454e-2036.54V-type ATP synthase beta chain OS=Chlamydia tracho... [more]
VATB_CHLTA3.454e-2036.54V-type ATP synthase beta chain OS=Chlamydia tracho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
back to top