DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLPN (V-type ATP synthase beta chain OS=Chlamydia pneumoniae GN=atpB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.239e-19
Identity = 56/156 (35.90%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G +  E+  I   DG      VL  D +K  +QVF GTSG+      V F G  ++      +LGR  NG GKPIDN      E  ++I+  + NP  R  P  M++T I  IDV N + + QKIP+FS++G  HN +
Sbjct:    5 YTKITDIKGNLITVE-AEGARLGELATITRSDGRSSYASVLRFDLKKVTLQVFGGTSGLSTG-DHVTFLGRPMEVTFGSSLLGRRLNGIGKPIDNEGECFGEP-IEIATPTFNPVCRIVPRSMVRTNIPMIDVFNCLVKSQKIPIFSSSGEHHNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLAB (V-type ATP synthase beta chain OS=Chlamydophila abortus GN=atpB PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.988e-19
Identity = 54/156 (34.62%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G +  E+  I   DG      VL  D +K  +QVF GTSG+      V F G  ++      ++GR  NG GKPID       +  ++IS  + NP  R  P +M++T I  IDV N + + QKIP+FS++G  HN +
Sbjct:    5 YTKITDIKGNLITVE-AEGARLGELAEIERVDGRSSYASVLRFDAKKVTLQVFGGTSGLSTGDRVV-FLGRSMEVTYGESLIGRRLNGVGKPIDGEGECFGDP-IEISTPTFNPVCRVVPRDMVRTNIPMIDVFNCLVKSQKIPIFSSSGEKHNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLCV (V-type ATP synthase beta chain OS=Chlamydophila caviae GN=atpB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.451e-18
Identity = 56/161 (34.78%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN-----GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G +  E+  I   DG      VL  D +K  +QVF GTSG+      + F G  ++      ++GR  NG GKPID      G PI       IS  + NP  R  P +M++T I  IDV N + + QKIP+FS++G  HN +
Sbjct:    5 YTKITDIKGNLITVE-AEGARLGELAEIERVDGRSSYASVLRFDAKKVTLQVFGGTSGLSTGDRVI-FLGRSMEVTYGESLIGRRLNGVGKPIDGEGECFGDPIA------ISTPTFNPVCRVVPRDMVKTNIPMIDVFNCLVKSQKIPIFSSSGESHNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CHLFF (V-type ATP synthase beta chain OS=Chlamydophila felis (strain Fe/C-56) GN=atpB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.229e-17
Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDN-----GPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            Y  +T + G L+ ++  +G +  E+  I   DG      VL  D +K  +QVF GTSG+      + F G  ++      ++GR  +G GKPID      G PI       IS  + NP  R  P +M++T I  ID+ N + + QKIP+FS++G  HN +
Sbjct:    5 YTKITDIKGNLITVE-AEGARLGELAEIERVDGRSSYASVLRFDAKKVTLQVFGGTSGLSTGDRVI-FLGRAMEVTYGESLIGRRLSGIGKPIDGEGECFGDPIA------ISTPTFNPVCRIVPRDMVRTNIPMIDMFNCLVKSQKIPIFSSSGENHNAL 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CLOCE (ATP synthase subunit beta OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=atpD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.976e-13
Identity = 44/150 (29.33%), Postives = 73/150 (48.67%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            +  V GP++ +    G  P  Y  + I    GT+    +  +  +         T G+       + TG+ +  PV  ++LGRIFN  G+P+D   P+ P AYL I   + +  E+    E+++TGI  +D++   A+G KI LF  AG+
Sbjct:    8 IVQVIGPVLDIRFENGILPDIYNAIKIPADSGTVTAEVMQHLGNDTVRCVAMSSTDGLVRGMKA-EDTGDAITVPVGKEVLGRIFNVLGEPVDKAGPVEPTAYLPIHREAPSLEEQRPSTEILETGIKVVDLLAPYAKGGKIGLFGGAGV 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CLOTH (ATP synthase subunit beta OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpD PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.030e-12
Identity = 49/152 (32.24%), Postives = 76/152 (50.00%), Query Frame = 1
Query:  145 TVTGVAGPLVIL--DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            TV  + GP++ +  ++ K P  Y  + I   +G     +V++  G   V  V    T G+      V  TGE +K PV  ++LGR+FN  G+PID    +    YL I   +    E+    E+++TGI  ID++   A+G KI LF  AG+
Sbjct:    8 TVVQIIGPVIDIRFERGKLPSIYNAIKIN-SEGIDIVAEVMQYTGNDTVRCVSMNSTDGLKRGMKAVD-TGEPIKVPVGKEVLGRVFNVLGEPIDGKGDVKATTYLPIHREAPGLDEQKPVTEILETGIKVIDLLAPYAKGGKIGLFGGAGV 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: FLII_BUCAI (Flagellum-specific ATP synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fliI PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.651e-12
Identity = 42/118 (35.59%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  253 QVLEVDGEKAVVQVFEGTSGI---DNKFTTVQFTGE--VLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            +V+   GEK  +  FE   GI      F+ +       + K P+ +++LGR+ +G G+P+D  P I  + Y  I   SINP  RT   E++ TGI  I+ + +I RGQKI +FS++G+
Sbjct:   82 EVIGFSGEKTFLLSFEDIHGIFPGARVFSKIASNSNFFIKKLPLGMELLGRVLDGRGQPLDQLPKIDHKYYSTIKNYSINPLNRTPITEVLDTGIRAINGLLTIGRGQKIGIFSSSGI 199          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_LACRJ (ATP synthase subunit beta OS=Lactobacillus reuteri (strain JCM 1112) GN=atpD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  148 VTGVAGPLVILD---KVKGPKYYEIVNIRLGDG-TMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA-YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            V  V GP+V ++     K P+  + + I+  DG T+     LE+          +GT G+      V+ TG  +  PV  D LGR+FN  G+P+DNGP   P+A  + I   +    +     E+++TGI  ID++    RG KI LF  AG+
Sbjct:    6 VLQVIGPVVDVEFPLDEKLPEINDALKIKESDGKTLTTEVALELGDGVVRTIAMDGTDGLQRGME-VENTGASISVPVGDDTLGRVFNVLGEPVDNGPKFGPDAKRMPIHRDAPKYDDLNNATEILETGIKVIDLLAPYVRGGKIGLFGGAGV 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_LACRD (ATP synthase subunit beta OS=Lactobacillus reuteri (strain DSM 20016) GN=atpD PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.713e-12
Identity = 50/153 (32.68%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  148 VTGVAGPLVILD---KVKGPKYYEIVNIRLGDG-TMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEA-YLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            V  V GP+V ++     K P+  + + I+  DG T+     LE+          +GT G+      V+ TG  +  PV  D LGR+FN  G+P+DNGP   P+A  + I   +    +     E+++TGI  ID++    RG KI LF  AG+
Sbjct:    6 VLQVIGPVVDVEFPLDEKLPEINDALKIKESDGKTLTTEVALELGDGVVRTIAMDGTDGLQRGME-VENTGASISVPVGDDTLGRVFNVLGEPVDNGPKFGPDAKRMPIHRDAPKYDDLNNATEILETGIKVIDLLAPYVRGGKIGLFGGAGV 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_THICR (ATP synthase subunit beta OS=Thiomicrospira crunogena (strain XCL-2) GN=atpD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 46/151 (30.46%), Postives = 77/151 (50.99%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKG---PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            +  + GP++ ++  KG   PK Y+ + +   D T+   +V +  G+  V  +  G+S    +   V  TGE +  PV    LGRIF+  G PIDN  P+  E  + I   +    E    +E+++TG+  ID++   A+G K+ LF  AG+
Sbjct:    5 IVQIIGPVIDVE-FKGADLPKIYDALKVDELDLTL---EVQQQVGDNVVRAIAMGSSDGLKRGMAVSNTGEAISVPVGKPTLGRIFDVLGNPIDNAGPVESEEKMTIHRPAPAFDELAASQELLETGVKVIDLICPFAKGGKVGLFGGAGV 151          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_CHLPN2.239e-1935.90V-type ATP synthase beta chain OS=Chlamydia pneumo... [more]
VATB_CHLAB4.988e-1934.62V-type ATP synthase beta chain OS=Chlamydophila ab... [more]
VATB_CHLCV1.451e-1834.78V-type ATP synthase beta chain OS=Chlamydophila ca... [more]
VATB_CHLFF1.229e-1733.54V-type ATP synthase beta chain OS=Chlamydophila fe... [more]
ATPB_CLOCE6.976e-1329.33ATP synthase subunit beta OS=Clostridium celluloly... [more]
ATPB_CLOTH2.030e-1232.24ATP synthase subunit beta OS=Clostridium thermocel... [more]
FLII_BUCAI2.651e-1235.59Flagellum-specific ATP synthase OS=Buchnera aphidi... [more]
ATPB_LACRJ7.713e-1232.68ATP synthase subunit beta OS=Lactobacillus reuteri... [more]
ATPB_LACRD7.713e-1232.68ATP synthase subunit beta OS=Lactobacillus reuteri... [more]
ATPB_THICR1.718e-1130.46ATP synthase subunit beta OS=Thiomicrospira crunog... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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