DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CHLLI (ATP synthase subunit beta OS=Chlorobium limicola GN=atpD PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.718e-11
Identity = 46/156 (29.49%), Postives = 80/156 (51.28%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            M+   ++ + GP+V +D  +G  P   + + +   DG+    +  +  GE+ V ++  EGT G+    +    TG+ ++ PV  ++LGR+ N  G PID   P+L +    I  ++    E +   EM +TGI  ID++   +RG K  LF  AG+
Sbjct:    1 MQEGKISQIIGPVVDVDFAEGQLPSILDALTVTRQDGSKLVLETQQHLGEERVRRIAMEGTDGLVRGMSAKN-TGKPIQVPVGEEVLGRMLNVVGDPIDGKGPVLSKKSYSIHRTAPKFDELSTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGV 155          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: HRPB6_XANEU (Probable ATP synthase hrpB6 OS=Xanthomonas euvesicatoria GN=hrpB6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.244e-11
Identity = 48/170 (28.24%), Postives = 85/170 (50.00%), Query Frame = 1
Query:   91 QNNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYY--EIVNIRLGDGTM-RRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            +  ++ E  TL V   Y  V  V G ++   KV G +    E+  +R  DGT+ +R +V+    + A++  F    G+  + T V   G  L  PV   +LGR+ +G G+P D    I  + ++ I   + +P  R   E  + TG+  +D + ++  GQ++ +F+AAG+
Sbjct:    9 ETTLERELATLAVGRRYGKVVEVVGTML---KVAGVQVSLGEVCELRQRDGTLLQRAEVVGFSRDLALLAPFGELIGLSRE-TRVIGLGRPLAVPVGPALLGRVLDGLGEPSDGQGAIACDTWVPIQAQAPDPMRRRLIEHPMPTGVRIVDGLMTLGEGQRMGIFAAAGV 174          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CLOBB (ATP synthase subunit beta OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 47/150 (31.33%), Postives = 69/150 (46.00%), Query Frame = 1
Query:  148 VTGVAGPLVIL--DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            V  V GP+V +  D    P  Y  ++I +G+ T+       V  +       E T G+      V  T + +  PV   +LGR+FN  GKPIDN   +  E    I   + +  ++    EM +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFDSDSLPNLYNAISIDMGERTLIAEVEQHVGDDIVRTIAMEATEGLKRGMDAVD-TEKAISVPVGDQVLGRLFNVLGKPIDNAGEVEAEEIYPIHRPAPSFKDQAVEPEMFETGIKVIDLLAPYQRGGKIGLFGGAGV 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CLOAB (ATP synthase subunit beta OS=Clostridium acetobutylicum GN=atpD PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.931e-11
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  148 VTGVAGPLVIL--DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            +  V GP+V +  D    P  Y  + I +GD      +V +  G+  V  +  EGT G+      V  TG+ +  PV  ++LGR+FN  G+ ID    +  + Y  I   +    E++   EM +TGI  ID++    +G KI LF  AG+
Sbjct:    8 IVQVIGPVVDIKFDAENLPDIYNSIEIDMGDNKKLIAEVEQHVGDDIVRTIAMEGTDGLKRGMEAVN-TGKPISVPVGENVLGRLFNVLGQTIDEAGDMNADKYYPIHRPAPTFEEQSVQPEMFETGIKVIDLLAPYQKGGKIGLFGGAGV 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CLOPS (ATP synthase subunit beta OS=Clostridium perfringens (strain SM101 / Type A) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            V  V GP+V +       P  +  ++I++ DG +   +V +  G+  V  +  E T G+      V  TG  +  PV   +LGRIFN  GKP+D+G  +  E    I   + +  E++   +M +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFANDELPNIFNAIHIKMDDGKILVCEVEQHVGDDIVRTIAMEATEGLRRGVEAVD-TGAPISVPVGECVLGRIFNVLGKPLDSGAEVNNEEKYPIHRPAPSFEEQSVVPQMFETGIKVIDLLAPYQRGGKIGLFGGAGV 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CLOPE (ATP synthase subunit beta OS=Clostridium perfringens GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            V  V GP+V +       P  +  ++I++ DG +   +V +  G+  V  +  E T G+      V  TG  +  PV   +LGRIFN  GKP+D+G  +  E    I   + +  E++   +M +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFANDELPNIFNAIHIKMDDGKILVCEVEQHVGDDIVRTIAMEATEGLRRGVEAVD-TGAPISVPVGECVLGRIFNVLGKPLDSGAEVNNEEKYPIHRPAPSFEEQSVVPQMFETGIKVIDLLAPYQRGGKIGLFGGAGV 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CLOP1 (ATP synthase subunit beta OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 48/151 (31.79%), Postives = 75/151 (49.67%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            V  V GP+V +       P  +  ++I++ DG +   +V +  G+  V  +  E T G+      V  TG  +  PV   +LGRIFN  GKP+D+G  +  E    I   + +  E++   +M +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFANDELPNIFNAIHIKMDDGKILVCEVEQHVGDDIVRTIAMEATEGLRRGVEAVD-TGAPISVPVGECVLGRIFNVLGKPLDSGAEVNNEEKYPIHRPAPSFEEQSVVPQMFETGIKVIDLLAPYQRGGKIGLFGGAGV 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CLOBA (ATP synthase subunit beta OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=atpD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.828e-11
Identity = 47/150 (31.33%), Postives = 69/150 (46.00%), Query Frame = 1
Query:  148 VTGVAGPLVIL--DKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            V  V GP+V +  D    P  Y  ++I +G+ T+       V  +       E T G+      V  T + +  PV   +LGR+FN  GKPIDN   +  E    I   + +  ++    EM +TGI  ID++    RG KI LF  AG+
Sbjct:    8 VVQVIGPVVDIKFDSDSLPNLYNAISIDMGERTLIAEVEQHVGDDIVRTIAMEATEGLKRGMDAVD-TEKAISVPVGDKVLGRLFNVLGKPIDNAGEVEAEEIYPIHRPAPSFKDQAVEPEMFETGIKVIDLLAPYQRGGKIGLFGGAGV 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_PSEHT (ATP synthase subunit beta OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 43/132 (32.58%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  196 PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            P  Y+ + +  GD T    +V +  G   V  +  GT+    +  +V  TGE ++ PV    LGRI N  G+PID   PI  E  + I  ++    E++   E+++TGI  ID++   A+G K+ LF  AG+
Sbjct:   24 PAVYDALRVTDGDLTGLTLEVQQQLGGGVVRTIAMGTTDGLRRGASVMNTGESIQVPVGKATLGRIMNVLGEPIDEAGPIGEEDRMSIHRAAPTYEEQSSSVELLETGIKVIDLVCPFAKGGKVGLFGGAGV 155          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_PELPB (ATP synthase subunit beta OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 48/156 (30.77%), Postives = 77/156 (49.36%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            M+   ++ + GP+V +D  +G  P   + + +   DGT    +  +  GE+ V  V  E T G+      V  TG+ ++ PV L++LGR+ N  G PID   P+  +    I   +    E +   EM +TGI  ID++   +RG K  LF  AG+
Sbjct:    1 MQEGKISQIIGPVVDVDFPEGRLPSILDALTVTRADGTKLVLETQQHLGEERVRTVAMESTDGLVRGMN-VTHTGKPIQVPVGLEVLGRMLNVVGDPIDGRGPVNTKKSYSIHRLAPRFDEISTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGV 155          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
ATPB_CHLLI1.718e-1129.49ATP synthase subunit beta OS=Chlorobium limicola G... [more]
HRPB6_XANEU2.244e-1128.24Probable ATP synthase hrpB6 OS=Xanthomonas euvesic... [more]
ATPB_CLOBB2.931e-1131.33ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_CLOAB2.931e-1131.13ATP synthase subunit beta OS=Clostridium acetobuty... [more]
ATPB_CLOPS3.828e-1131.79ATP synthase subunit beta OS=Clostridium perfringe... [more]
ATPB_CLOPE3.828e-1131.79ATP synthase subunit beta OS=Clostridium perfringe... [more]
ATPB_CLOP13.828e-1131.79ATP synthase subunit beta OS=Clostridium perfringe... [more]
ATPB_CLOBA3.828e-1131.33ATP synthase subunit beta OS=Clostridium botulinum... [more]
ATPB_PSEHT5.000e-1132.58ATP synthase subunit beta OS=Pseudoalteromonas hal... [more]
ATPB_PELPB5.000e-1130.77ATP synthase subunit beta OS=Pelodictyon phaeoclat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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