DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_CHLP8 (ATP synthase subunit beta OS=Chlorobaculum parvum (strain NCIB 8327) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 46/156 (29.49%), Postives = 78/156 (50.00%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            M+   ++ + GP+V +D  +G  P   + + +   DG+    +  +  GE+ V  +  EGT G+    +    TG  ++ PV  ++LGR+ N  G+PID   P+  +    I  S+    E +   EM +TGI  ID++   +RG K  LF  AG+
Sbjct:    1 MQEGKISQIIGPVVDVDFPEGQLPSILDALTVTRQDGSKLVLETQQHLGEERVRTISMEGTDGLVRGMSVAN-TGRPIQAPVGAEVLGRMLNVVGEPIDGKGPVPSKKSYPIHRSAPKFDELSTKAEMFETGIKVIDLLEPYSRGGKTGLFGGAGV 155          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPA2_RHOS4 (ATP synthase subunit alpha 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 564
            +  +A  LV ++ + G +  E+V    G      G VL +D E   V + +  + + +  T V+ TG++L  PV   +LGR+ +  G+P+D  P ILPEA L+I   +    +R    E ++TG+  +D + ++ RGQ+
Sbjct:   29 IATLADGLVEVEGLPGARLGEVVRFAGG----AEGLVLTLDPETVQVALLDPGAALGSG-TEVRRTGQLLSVPVGQGLLGRVVDPLGRPLDGLPAILPEARLEIERPAPGIVDRDMVAEPVETGLLVVDALFAVGRGQR 162          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPA2_RHOS1 (ATP synthase subunit alpha 2 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.000e-11
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQK 564
            +  +A  LV ++ + G +  E+V    G      G VL +D E   V + +  + + +  T V+ TG++L  PV   +LGR+ +  G+P+D  P ILPEA L+I   +    +R    E ++TG+  +D + ++ RGQ+
Sbjct:   29 IATLADGLVEVEGLPGARLGEVVRFAGG----AEGLVLTLDPETVQVALLDPGAALGSG-TEVRRTGQLLSVPVGQGLLGRVVDPLGRPLDGLPAILPEARLEIERPAPGIVDRDMVAEPVETGLLVVDALFAVGRGQR 162          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_NOSP7 (ATP synthase subunit beta OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 51/156 (32.69%), Postives = 73/156 (46.79%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVD-------GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            +T + GP+V + K  G K  +I N     GT   GQ + +        G+  V  V    T G+   F     TG  +  PV    LGRIFN  G+P+DN  P+  EA L I  S+   ++      + +TGI  +D++    RG KI LF  AG+
Sbjct:   13 ITQIIGPVVDV-KFPGGKLPQIYNALKIVGTNESGQEINITVEVQQLLGDNQVRTVAMSSTEGLVRGFEVTD-TGAPITVPVGKATLGRIFNVLGEPVDNRGPVNAEASLPIHRSAPKFTDLETKPSVFETGIKVVDLLTPYRRGGKIGLFGGAGV 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_LACPL (ATP synthase subunit beta OS=Lactobacillus plantarum GN=atpD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 1
Query:  148 VTGVAGPLVILDKVKGPKYYEIVNIRL----GDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLD-ISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            V  V GP+V ++     K  +I N  +     D T+     LE+          +GT G+  +  TV+ TG  +  PV  + LGR+FN  G+ ID GP   P+A  + I   +    E T   E+++TGI  ID++    RG KI LF  AG+
Sbjct:    6 VVQVIGPVVDVEFSLNDKLPDINNALIIQKDNDDTLTVEVSLELGDGVVRTVAMDGTDGL-RRGMTVEDTGSSITVPVGKETLGRVFNVLGETIDGGPEFGPDAERNPIHRDAPKYDELTTSTEVLETGIKVIDLLAPYVRGGKIGLFGGAGV 157          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_COLP3 (ATP synthase subunit beta OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 46/135 (34.07%), Postives = 70/135 (51.85%), Query Frame = 1
Query:  196 PKYYEIVNIRLGDGTMRRGQVLEVD---GEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            P+ Y+ + I  GD     G VLEV    G   V  +  GTS    +   V  TG+ ++ PV ++ LGRI N  G+PID   PI  +    I   +   +E++   E+++TGI  ID++   A+G K+ LF  AG+
Sbjct:   24 PQVYDALKITEGD---LEGLVLEVQQQLGGGVVRTIAMGTSDGLRRGLNVVNTGQGIQVPVGVETLGRIMNVLGEPIDEAGPIGEKDRWSIHREAPAYAEQSMSNELLETGIKVIDLVCPFAKGGKVGLFGGAGV 155          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB2_PSEA6 (ATP synthase subunit beta 2 OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=atpD2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 1
Query:  196 PKYYEIVNIRLGDGTMRRGQVLEVD---GEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            PK Y+ + I  GD    +G  LEV    G   V  +  GT+    +  TV  TGE ++ PV    LGRI +  G PID   PI  E  + I   +    +++   E+++TGI  ID++   A+G K+ LF  AG+
Sbjct:   24 PKIYDALRITEGD---LQGLTLEVQQQLGGGVVRTIALGTTDGLRRGLTVDNTGEAIQVPVGKATLGRIMDVLGNPIDEAGPIGEEERMSIHREAPTYEDQSSSIELLETGIKVIDLVCPFAKGGKVGLFGGAGV 155          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_TOLAT (ATP synthase subunit beta OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=atpD PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  196 PKYYEIVNIRLGDGTMRRGQVLEVD---GEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            PK Y+ + I + +G   +G V+EV    G   V  +  GTS    +   V  TGE +K PV +  LGRI N  G+P+D   PI  E    I   + +  +++   E+++TGI  ID++   A+G K+ LF  AG+
Sbjct:   24 PKVYDALKI-VSEG-QSKGLVMEVQQQIGGGVVRCIAMGTSDGLRRGAEVSNTGEAIKVPVGMKTLGRIMNVLGEPVDEQGPIGAEDNWVIHREAPSYEDQSSATELLETGIKVIDLICPFAKGGKVGLFGGAGV 156          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB_PORYE (ATP synthase subunit beta, chloroplastic OS=Porphyra yezoensis GN=atpB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 46/152 (30.26%), Postives = 77/152 (50.66%), Query Frame = 1
Query:  145 TVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            +VT + GP++ +    G  PK +  + ++  +GT+   +V ++ G+  V  V    T G+      +  TG  +  PV  D LGRIFN  G+P+DN  P+  E+ L I   +   ++      + +TGI  +D++    RG KI LF  AG+
Sbjct:   10 SVTQIIGPVLDIAFPNGQLPKVFNALKVQSSEGTITC-EVQQLLGDNKVRAVSMSSTEGLQRGVEVID-TGSPISVPVGTDTLGRIFNVLGEPVDNLGPVDSESTLPIHRPAPAFTKLETKPNIFETGIKVVDLLAPYRRGGKIGLFGGAGV 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: ATPB2_CHLTE (ATP synthase subunit beta 2 OS=Chlorobium tepidum GN=atpD2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.528e-11
Identity = 46/156 (29.49%), Postives = 79/156 (50.64%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKG--PKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGL 591
            M+   ++ + GP+V +D  +G  P   + + +   DG+    +  +  GE+ V  +  EGT G+    + V  TG+ ++ PV  ++LGR+ N  G PID   P+  +    I  ++    E +   EM +TGI  ID++   +RG K  LF  AG+
Sbjct:    1 MQEGKISQIIGPVVDVDFPEGQLPSILDALTVTRQDGSKLVLETQQHLGEERVRTIAMEGTDGLVRGMSAVN-TGKPIQVPVGGEVLGRMLNVVGDPIDGKGPVPAKKTYSIHRAAPKFDELSTKTEMFETGIKVIDLLEPYSRGGKTGLFGGAGV 155          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
ATPB_CHLP85.000e-1129.49ATP synthase subunit beta OS=Chlorobaculum parvum ... [more]
ATPA2_RHOS45.000e-1130.22ATP synthase subunit alpha 2 OS=Rhodobacter sphaer... [more]
ATPA2_RHOS15.000e-1130.22ATP synthase subunit alpha 2 OS=Rhodobacter sphaer... [more]
ATPB_NOSP76.530e-1132.69ATP synthase subunit beta OS=Nostoc punctiforme (s... [more]
ATPB_LACPL6.530e-1132.68ATP synthase subunit beta OS=Lactobacillus plantar... [more]
ATPB_COLP36.530e-1134.07ATP synthase subunit beta OS=Colwellia psychreryth... [more]
ATPB2_PSEA66.530e-1134.07ATP synthase subunit beta 2 OS=Pseudoalteromonas a... [more]
ATPB_TOLAT8.528e-1134.07ATP synthase subunit beta OS=Tolumonas auensis (st... [more]
ATPB_PORYE8.528e-1130.26ATP synthase subunit beta, chloroplastic OS=Porphy... [more]
ATPB2_CHLTE8.528e-1129.49ATP synthase subunit beta 2 OS=Chlorobium tepidum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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