DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB1_HUMAN (V-type proton ATPase subunit B, kidney isoform OS=Homo sapiens GN=ATP6V1B1 PE=1 SV=3)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 114/157 (72.61%), Postives = 130/157 (82.80%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            YRTV  V GPLV+LD+VK  +Y EIV+  L DGT R GQVLEV G KA+VQVFEGTSGID + TT +FTG++L+TPVS DMLGR+FNGSGKPID GP ++ E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   41 YRTVCSVNGPLVVLDRVKFAQYAEIVHFTLPDGTQRSGQVLEVAGTKAIVQVFEGTSGIDARKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHSRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIA 197          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_PLAFA (V-type proton ATPase subunit B OS=Plasmodium falciparum GN=VAPB PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 9.935e-60
Identity = 112/158 (70.89%), Postives = 134/158 (84.81%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEI 606
            +EY+T++GV GPLVI++ VK PKY EIV I L D T R+GQ+LEV G+KAV+QVFEGTSGIDNK + V+ +G++LK P+S +MLGR+FNGSGKPID GP IL + YLDI+G+ INP  R YP+EMIQTGISTIDVMNSI RGQKIPLFSAAGLPHNEI
Sbjct:   30 LEYKTISGVQGPLVIIEDVKFPKYSEIVTIHLSDNTTRQGQILEVCGKKAVIQVFEGTSGIDNKNSYVEVSGDILKMPMSDEMLGRVFNGSGKPIDKGPNILADDYLDINGNPINPQCRVYPKEMIQTGISTIDVMNSIVRGQKIPLFSAAGLPHNEI 187          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB1_BOVIN (V-type proton ATPase subunit B, kidney isoform OS=Bos taurus GN=ATP6V1B1 PE=1 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 9.935e-60
Identity = 113/157 (71.97%), Postives = 131/157 (83.44%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            YRTV  V GPLV+LD+VK  +Y EIVN  L +GT R GQVLEV G KA+VQVFEGTSGID + TT +FTG++L+TPVS DMLGR+FNGSGKPID GP ++ E +LDI+G  INP +R YPEEMI+TGIS IDVMNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   41 YRTVCSVNGPLVVLDQVKFAQYAEIVNFTLPNGTQRSGQVLEVSGTKAIVQVFEGTSGIDAQKTTCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPVVMAEDFLDINGQPINPHDRIYPEEMIETGISPIDVMNSIARGQKIPIFSAAGLPHNEIA 197          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CAEEL (Probable V-type proton ATPase subunit B OS=Caenorhabditis elegans GN=vha-12 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.695e-59
Identity = 115/157 (73.25%), Postives = 130/157 (82.80%), Query Frame = 1
Query:  139 YRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            Y+TV GV GPLVIL+ VK P++ EIV I L DG+ R GQVLE+   KAVVQVFEGTSGID K T  +FTG++L+TPVS DMLGRIFNGSGKPID GPP+L E +LDI+G  INP  R YPEEMIQTGIS IDVMNSIARGQKIP+FSA+GLPHNEIA
Sbjct:   29 YQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIA 185          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CANTR (V-type proton ATPase subunit B OS=Candida tropicalis GN=VMA2 PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.775e-59
Identity = 116/159 (72.96%), Postives = 129/159 (81.13%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y  V GV GPLVILD VK P+Y EIVN+ L DGT+R+GQVLEV G KA+VQVFEGTSGID K T V+FTGE LK PVS DMLGRIF+GSG+PID GP I  E YLDI+GS INP  R YPEEMI TG+S ID MNSIARGQKIP+FSA+GLPHNEIA
Sbjct:   26 INYTPVGGVNGPLVILDNVKFPRYNEIVNLTLPDGTVRQGQVLEVRGTKAIVQVFEGTSGIDVKKTRVEFTGENLKIPVSEDMLGRIFDGSGRPIDKGPKIFAEDYLDINGSPINPYARIYPEEMISTGVSAIDTMNSIARGQKIPIFSASGLPHNEIA 184          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_SCHPO (V-type proton ATPase subunit B OS=Schizosaccharomyces pombe GN=vma2 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.874e-58
Identity = 109/168 (64.88%), Postives = 135/168 (80.36%), Query Frame = 1
Query:  106 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            +++ +++  + Y TV  + GPLVILD ++ P+Y EIVN+ L DG++R GQVLEV G KA+VQVFEGTSG+D + TT+ FTG  ++ PVS DMLGR+FNGSG PID GP +L E YLDI+GS INP  R YPEEMIQTGIS+ID +NSIARGQKIP+FSAAGLPHNEIA
Sbjct:   13 VKDYSIKPRLSYNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQKIPIFSAAGLPHNEIA 180          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_TRYCO (V-type proton ATPase subunit B OS=Trypanosoma congolense PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.120e-58
Identity = 113/159 (71.07%), Postives = 128/159 (80.50%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            +EY T+  V GPLVIL  V+ P + EIVNI L DGTMRRGQVLEVDG+KAVVQVFEGTSGID   +  +FTG+V++  VS DMLGR+FNGSG PID+GPP+L E Y DI G  INP  R YPEEMIQTGIS+IDVM SI+RGQKIPLFS AGLPHNEIA
Sbjct:   25 LEYTTIRAVNGPLVILGDVRLPTFAEIVNIELSDGTMRRGQVLEVDGDKAVVQVFEGTSGIDVMRSKCEFTGKVMELGVSEDMLGRVFNGSGIPIDDGPPVLAEQYRDIQGIPINPRARVYPEEMIQTGISSIDVMTSISRGQKIPLFSGAGLPHNEIA 183          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_ENCCU (V-type proton ATPase subunit B OS=Encephalitozoon cuniculi GN=VMA2 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.586e-57
Identity = 110/168 (65.48%), Postives = 134/168 (79.76%), Query Frame = 1
Query:  106 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            +E   +E  M YR + GV GPLVI+D ++  KY E+V++ L DG++R+GQVLEV G+KAV+QVFEGT+GID K T V FTGE +K  +S D+LGRIFNGSG+ ID GP I+PE YLDI G  +NP  R YPEEMIQTGIS+IDVMNSIARGQKIP+FSA+GLPHNEIA
Sbjct:    2 LESVRIEPKMSYRKIVGVNGPLVIMDNIRFLKYAEMVSLTLPDGSVRQGQVLEVSGKKAVIQVFEGTAGIDVKETQVTFTGETMKMGMSEDVLGRIFNGSGRVIDGGPKIIPEDYLDIQGQPLNPYARIYPEEMIQTGISSIDVMNSIARGQKIPIFSASGLPHNEIA 169          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_NEUCR (V-type proton ATPase subunit B OS=Neurospora crassa GN=vma-2 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 4.615e-57
Identity = 114/159 (71.70%), Postives = 125/159 (78.62%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + Y TV GV GPLVILD VK P+Y EIV + L DGT R GQVLE  G +AVVQVFEGTSGID K T V+FTGE LK  VS DMLGRIF+GSG+ ID GP +L E YLDI+GS INP  R YP+EMI TGIS ID MNSIARGQKIP+FSAAGLPHNEIA
Sbjct:   16 IRYNTVGGVNGPLVILDNVKFPRYNEIVTLTLPDGTQRSGQVLEARGNRAVVQVFEGTSGIDVKKTKVEFTGESLKLGVSEDMLGRIFDGSGRAIDKGPKVLAEEYLDINGSPINPYAREYPQEMISTGISAIDTMNSIARGQKIPIFSAAGLPHNEIA 174          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRSV (V-type ATP synthase beta chain OS=Streptococcus sanguinis (strain SK36) GN=atpB PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.897e-51
Identity = 98/163 (60.12%), Postives = 126/163 (77.30%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRTV+ V GPL+I+D+V G  + E+V I+L DG+ R+GQVLEV  +KA+VQ+FEG+SGI+ +   V+FTG  L+ PVS DM+GRIFNG GKPID GP ILPE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    1 MSVIKEYRTVSEVVGPLMIVDQVAGVHFNELVEIQLHDGSKRQGQVLEVQEDKAMVQLFEGSSGINLEKAKVRFTGRPLELPVSEDMVGRIFNGMGKPIDGGPAILPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELA 163          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB1_HUMAN7.607e-6072.61V-type proton ATPase subunit B, kidney isoform OS=... [more]
VATB_PLAFA9.935e-6070.89V-type proton ATPase subunit B OS=Plasmodium falci... [more]
VATB1_BOVIN9.935e-6071.97V-type proton ATPase subunit B, kidney isoform OS=... [more]
VATB_CAEEL1.695e-5973.25Probable V-type proton ATPase subunit B OS=Caenorh... [more]
VATB_CANTR3.775e-5972.96V-type proton ATPase subunit B OS=Candida tropical... [more]
VATB_SCHPO1.874e-5864.88V-type proton ATPase subunit B OS=Schizosaccharomy... [more]
VATB_TRYCO7.120e-5871.07V-type proton ATPase subunit B OS=Trypanosoma cong... [more]
VATB_ENCCU1.586e-5765.48V-type proton ATPase subunit B OS=Encephalitozoon ... [more]
VATB_NEUCR4.615e-5771.70V-type proton ATPase subunit B OS=Neurospora crass... [more]
VATB_STRSV2.897e-5160.12V-type ATP synthase beta chain OS=Streptococcus sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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