DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRP1 (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M1 GN=atpB PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.184e-50
Identity = 95/163 (58.28%), Postives = 126/163 (77.30%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  VS DM+GRIF+G G+PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGQPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELA 163          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METKA (V-type ATP synthase beta chain OS=Methanopyrus kandleri GN=atpB PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.184e-50
Identity = 95/168 (56.55%), Postives = 122/168 (72.62%), Query Frame = 1
Query:  106 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            M E       EY T++ V+GPL++++ V+G KY E+V +    G +RRGQVLE   + AVVQVFEGTSG+D   T V+FTGE L+ PVS D+LGRI NG G+PID GP I+PE  LDI G+ INP+ R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MAEAERPAGKEYTTISEVSGPLMVVEGVEGAKYGEVVEVETPTGEVRRGQVLEARRDAAVVQVFEGTSGLDTTSTKVRFTGETLRIPVSTDLLGRILNGRGEPIDGGPEIVPEDELDIHGAPINPAARKYPSDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNELA 168          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRPM (V-type ATP synthase beta chain OS=Streptococcus pyogenes serotype M28 GN=atpB PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 7.136e-50
Identity = 95/163 (58.28%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRTV+ V GPL+I+D+V G  Y E+V+I L +G  R+GQVLEV G+KA+VQ+FEG++GI+   T V+FTG  L+  VS DM+GRIF+G G PID GP ++PE YLDI G +INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MSVLKEYRTVSEVVGPLMIVDQVAGVHYNELVDITLHNGERRKGQVLEVQGDKAMVQLFEGSTGINLAKTKVRFTGHPLELAVSEDMVGRIFDGMGHPIDGGPELIPEKYLDIDGQAINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHNELA 163          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METTH (V-type ATP synthase beta chain OS=Methanobacterium thermoautotrophicum GN=atpB PE=3 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 9.320e-50
Identity = 97/158 (61.39%), Postives = 122/158 (77.22%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY TVT V+GPL+I++ V+G  Y EIV I    G  RRGQVLEV  + AVVQVFEGTS ++ + T ++FTGE  K  VSLDM+GRIF+G+GKPID GP I+PE  LDI+GS +NP+ R +P E IQTGISTID MN++ RGQK+P+FS +GLPHNE+A
Sbjct:    9 EYTTVTEVSGPLMIVEGVEGVAYSEIVEIETPTGEKRRGQVLEVREDLAVVQVFEGTSDLNTETTKIRFTGETAKIGVSLDMMGRIFDGTGKPIDGGPEIIPEKELDINGSPMNPAAREFPAEFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNELA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: NTPB_ENTHR (V-type sodium ATPase subunit B OS=Enterococcus hirae GN=ntpB PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.076e-49
Identity = 92/158 (58.23%), Postives = 123/158 (77.85%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRT+  V GPL+ ++KV G KY E++ +R+ +G +RRGQVLEV  +KA+VQ+FEGTSGI+ K ++V+F G  L+  VS DM+GR+F+G G+P DNGP ILPE YLDI+G  INP  R YP+E IQTGIS ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSGSGLPHKELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRZJ (V-type ATP synthase beta chain OS=Streptococcus pneumoniae (strain JJA) GN=atpB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 91/163 (55.83%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRT + V GPL+I+++V    Y E+V I+L +G +RRGQVLE+  +KA+VQ+FEG+SGI+ + + ++F G  L+  VS DM+GRIFNG GKPID GP ++PE YLDI G +INP  R YP+E IQTGIS+ID +N++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELA 163          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRPS (V-type ATP synthase beta chain OS=Streptococcus pneumoniae (strain CGSP14) GN=atpB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 91/163 (55.83%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRT + V GPL+I+++V    Y E+V I+L +G +RRGQVLE+  +KA+VQ+FEG+SGI+ + + ++F G  L+  VS DM+GRIFNG GKPID GP ++PE YLDI G +INP  R YP+E IQTGIS+ID +N++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELA 163          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRPN (V-type ATP synthase beta chain OS=Streptococcus pneumoniae GN=atpB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 91/163 (55.83%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRT + V GPL+I+++V    Y E+V I+L +G +RRGQVLE+  +KA+VQ+FEG+SGI+ + + ++F G  L+  VS DM+GRIFNG GKPID GP ++PE YLDI G +INP  R YP+E IQTGIS+ID +N++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELA 163          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRPJ (V-type ATP synthase beta chain OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=atpB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 91/163 (55.83%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRT + V GPL+I+++V    Y E+V I+L +G +RRGQVLE+  +KA+VQ+FEG+SGI+ + + ++F G  L+  VS DM+GRIFNG GKPID GP ++PE YLDI G +INP  R YP+E IQTGIS+ID +N++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELA 163          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRPI (V-type ATP synthase beta chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=atpB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 91/163 (55.83%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRT + V GPL+I+++V    Y E+V I+L +G +RRGQVLE+  +KA+VQ+FEG+SGI+ + + ++F G  L+  VS DM+GRIFNG GKPID GP ++PE YLDI G +INP  R YP+E IQTGIS+ID +N++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELA 163          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_STRP14.184e-5058.28V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_METKA4.184e-5056.55V-type ATP synthase beta chain OS=Methanopyrus kan... [more]
VATB_STRPM7.136e-5058.28V-type ATP synthase beta chain OS=Streptococcus py... [more]
VATB_METTH9.320e-5061.39V-type ATP synthase beta chain OS=Methanobacterium... [more]
NTPB_ENTHR2.076e-4958.23V-type sodium ATPase subunit B OS=Enterococcus hir... [more]
VATB_STRZJ3.542e-4955.83V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_STRPS3.542e-4955.83V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_STRPN3.542e-4955.83V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_STRPJ3.542e-4955.83V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_STRPI3.542e-4955.83V-type ATP synthase beta chain OS=Streptococcus pn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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