DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STRP4 (V-type ATP synthase beta chain OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=atpB PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.542e-49
Identity = 91/163 (55.83%), Postives = 125/163 (76.69%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            + V  EYRT + V GPL+I+++V    Y E+V I+L +G +RRGQVLE+  +KA+VQ+FEG+SGI+ + + ++F G  L+  VS DM+GRIFNG GKPID GP ++PE YLDI G +INP  R YP+E IQTGIS+ID +N++ RGQK+P+FS +GLPHNE+A
Sbjct:    1 MSVIKEYRTASEVVGPLMIVEQVNNVSYNELVEIQLHNGEIRRGQVLEIHEDKAMVQLFEGSSGINLEKSKIRFAGHALELAVSEDMVGRIFNGMGKPIDGGPDLIPEKYLDIDGQAINPVSRDYPDEFIQTGISSIDHLNTLVRGQKLPVFSGSGLPHNELA 163          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_PYRAB (V-type ATP synthase beta chain OS=Pyrococcus abyssi GN=atpB PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.346e-48
Identity = 91/163 (55.83%), Postives = 120/163 (73.62%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            +E++ EY T++ + GPL+I++ VKG  Y E+V I    G  R+GQVL+     A+VQVFEGT  +D K T+V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN++A
Sbjct:    2 MEMSKEYSTISKIYGPLMIVEGVKGVAYGEVVEIETESGEKRKGQVLDARENLAIVQVFEGTRDLDVKTTSVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNQLA 164          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METMA (V-type ATP synthase beta chain OS=Methanosarcina mazei GN=atpB PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.346e-48
Identity = 94/161 (58.39%), Postives = 125/161 (77.64%), Query Frame = 1
Query:  127 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            +A EY+T+T +AGPL+ ++K +   Y EIVNI++GDGT+RRGQVL+   +  VVQVFEGT G+D K   V FTGE LK P S+D+LGRI +GSG+P D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA
Sbjct:    1 MAKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA 160          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_PYRHO (V-type ATP synthase beta chain OS=Pyrococcus horikoshii GN=atpB PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.998e-48
Identity = 90/163 (55.21%), Postives = 120/163 (73.62%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            ++++ EY T++ + GPL+I++ VKG  Y E+V I    G  R+GQVL+     A+VQVFEGT  +D K T+V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN++A
Sbjct:    2 MKMSKEYSTISKIYGPLMIVEGVKGVAYGEVVEIETESGEKRKGQVLDARENMAIVQVFEGTRDLDIKTTSVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNQLA 164          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_DESSY (V-type ATP synthase beta chain OS=Desulfurococcus sp. (strain SY) GN=atpB PE=3 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 2.998e-48
Identity = 93/159 (58.49%), Postives = 116/159 (72.96%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            MEY TV+ + GPL+I++ VKG  Y E+V I    G  R+GQVLE     A+VQVFEGT  +D K T+V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +A
Sbjct:    4 MEYSTVSKIYGPLMIVEGVKGVAYGEVVEIETESGEKRKGQVLEARENLAIVQVFEGTRDLDVKTTSVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLA 162          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THESI (V-type ATP synthase beta chain OS=Thermococcus sp. (strain KI) GN=atpB PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.916e-48
Identity = 93/159 (58.49%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            MEY TV+ + GPL+I+  VKG  Y E+V I    G  R+GQVLE   + A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +A
Sbjct:    4 MEYSTVSKIYGPLMIVQGVKGVAYGEVVEIETESGEKRKGQVLEAREDMAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLA 162          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_PYRKO (V-type ATP synthase beta chain OS=Pyrococcus kodakaraensis GN=atpB PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.916e-48
Identity = 93/159 (58.49%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            MEY TV+ + GPL+I+  VKG  Y E+V I    G  R+GQVLE   + A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +A
Sbjct:    6 MEYSTVSKIYGPLMIVQGVKGVAYGEVVEIETESGEKRKGQVLEAREDMAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLA 164          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METST (V-type ATP synthase beta chain OS=Methanosphaera stadtmanae (strain DSM 3091) GN=atpB PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.916e-48
Identity = 98/172 (56.98%), Postives = 124/172 (72.09%), Query Frame = 1
Query:   94 NNVDMEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            N+VD++        EY TV+ VAGPL+++  V+G  Y EIV I    G  R GQVLEV  + AVVQVFEGTS ++ + T V+FTGE  K  +S DMLGRIFNG GKPID GP I+P+  LD++GS +NPS R +P E IQTGISTID MN++ RGQK+P+FS +GLPHNE+A
Sbjct:    2 NDVDIK------TREYTTVSEVAGPLMVVQGVEGAAYNEIVEIETPAGENRTGQVLEVKEDIAVVQVFEGTSDLNTESTKVRFTGETAKIGLSTDMLGRIFNGIGKPIDGGPDIIPDQELDVNGSPMNPSAREFPAEFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNELA 167          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THEGJ (V-type ATP synthase beta chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpB PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.114e-48
Identity = 93/159 (58.49%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            MEY TV+ + GPL+I++ VKG  Y E+V I    G  R+GQVLE     A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN +A
Sbjct:    4 MEYSTVSKIYGPLMIVEGVKGVAYGEVVEIETESGEKRKGQVLEARENLAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNMLA 162          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THEON (V-type ATP synthase beta chain OS=Thermococcus onnurineus (strain NA1) GN=atpB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.679e-48
Identity = 91/159 (57.23%), Postives = 115/159 (72.33%), Query Frame = 1
Query:  133 MEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            MEY TV+ + GPL+I+  VKG  Y E+V I    G  R+GQVLE   + A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGR+FNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTG+S ID MN++ RGQK+P+FS +GLPHN +A
Sbjct:    6 MEYSTVSKIYGPLMIVQGVKGVAYGEVVEIETESGEKRKGQVLEARQDMAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRVFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGVSAIDGMNTLVRGQKLPIFSGSGLPHNMLA 164          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_STRP43.542e-4955.83V-type ATP synthase beta chain OS=Streptococcus pn... [more]
VATB_PYRAB1.346e-4855.83V-type ATP synthase beta chain OS=Pyrococcus abyss... [more]
VATB_METMA1.346e-4858.39V-type ATP synthase beta chain OS=Methanosarcina m... [more]
VATB_PYRHO2.998e-4855.21V-type ATP synthase beta chain OS=Pyrococcus horik... [more]
VATB_DESSY2.998e-4858.49V-type ATP synthase beta chain OS=Desulfurococcus ... [more]
VATB_THESI3.916e-4858.49V-type ATP synthase beta chain OS=Thermococcus sp.... [more]
VATB_PYRKO3.916e-4858.49V-type ATP synthase beta chain OS=Pyrococcus kodak... [more]
VATB_METST3.916e-4856.98V-type ATP synthase beta chain OS=Methanosphaera s... [more]
VATB_THEGJ5.114e-4858.49V-type ATP synthase beta chain OS=Thermococcus gam... [more]
VATB_THEON6.679e-4857.23V-type ATP synthase beta chain OS=Thermococcus onn... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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