DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOPS (V-type ATP synthase beta chain OS=Clostridium perfringens (strain SM101 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.679e-48
Identity = 92/158 (58.23%), Postives = 122/158 (77.22%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTVT V GPL+ ++ V+G KY E+V I +  G +RRG+VLEV+G+KA+VQ+FEG++GI+ K T V+F G  L+  VS DMLGR+F+G G+P DNGP I+PE  LDI+G +INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTVTEVVGPLMAVEGVEGVKYDELVEIEMQTGELRRGKVLEVNGDKAMVQLFEGSAGINLKNTKVRFLGRPLEIGVSEDMLGRVFDGMGRPKDNGPNIIPEKRLDINGEAINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHKELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOPE (V-type ATP synthase beta chain OS=Clostridium perfringens GN=atpB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.679e-48
Identity = 92/158 (58.23%), Postives = 122/158 (77.22%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTVT V GPL+ ++ V+G KY E+V I +  G +RRG+VLEV+G+KA+VQ+FEG++GI+ K T V+F G  L+  VS DMLGR+F+G G+P DNGP I+PE  LDI+G +INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTVTEVVGPLMAVEGVEGVKYDELVEIEMQTGELRRGKVLEVNGDKAMVQLFEGSAGINLKNTKVRFLGRPLEIGVSEDMLGRVFDGMGRPKDNGPNIIPEKRLDINGEAINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHKELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOP1 (V-type ATP synthase beta chain OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.679e-48
Identity = 92/158 (58.23%), Postives = 122/158 (77.22%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTVT V GPL+ ++ V+G KY E+V I +  G +RRG+VLEV+G+KA+VQ+FEG++GI+ K T V+F G  L+  VS DMLGR+F+G G+P DNGP I+PE  LDI+G +INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTVTEVVGPLMAVEGVEGVKYDELVEIEMQTGELRRGKVLEVNGDKAMVQLFEGSAGINLKNTKVRFLGRPLEIGVSEDMLGRVFDGMGRPKDNGPNIIPEKRLDINGEAINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHKELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOBB (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=atpB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.679e-48
Identity = 92/158 (58.23%), Postives = 121/158 (76.58%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTVT V GPL++++ V+G KY E+V I L  G  RRG+VLEV+G KA+VQ+FEG+SGI+ K T  +F G  L+  VS DMLGR+F+G G+P DNGP I+PE  +DI+G +INP  R +P E IQTG+S ID +N++ RGQK+P+FSAAGLPH E+A
Sbjct:    4 EYRTVTEVVGPLMVVEGVEGVKYDELVEIELHTGEKRRGKVLEVNGSKAMVQIFEGSSGINLKGTKAKFLGRPLELGVSEDMLGRVFDGMGRPNDNGPDIIPEKRVDINGEAINPMARDFPSEFIQTGVSAIDGLNTLVRGQKLPVFSAAGLPHAELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOBA (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=atpB PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.679e-48
Identity = 92/158 (58.23%), Postives = 121/158 (76.58%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTVT V GPL++++ V+G KY E+V I L  G  RRG+VLEV+G KA+VQ+FEG+SGI+ K T  +F G  L+  VS DMLGR+F+G G+P DNGP I+PE  +DI+G +INP  R +P E IQTG+S ID +N++ RGQK+P+FSAAGLPH E+A
Sbjct:    4 EYRTVTEVVGPLMVVEGVEGVKYDELVEIELHTGEKRRGKVLEVNGSKAMVQIFEGSSGINLKGTKAKFLGRPLELGVSEDMLGRVFDGMGRPNDNGPDIIPEKRVDINGEAINPMARDFPSEFIQTGVSAIDGLNTLVRGQKLPVFSAAGLPHAELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_FUSNN (V-type ATP synthase beta chain OS=Fusobacterium nucleatum subsp. nucleatum GN=atpB PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.724e-48
Identity = 90/158 (56.96%), Postives = 123/158 (77.85%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY++V  V GPL+I++ V+G KY E+V I+   G  RRG+VLE+DG++A++Q+FEG++GI+ K TTV+F G+ L+  VS DM+GRIF+G G PID GP I+PE  +DI+GS INP  R YP E IQTGISTID +N++ RGQK+P+FS +GLPHN +A
Sbjct:    4 EYKSVQEVVGPLMIVEGVEGIKYEELVEIQTQTGEKRRGRVLEIDGDRAMIQLFEGSAGINLKDTTVRFLGKPLELGVSEDMIGRIFDGLGNPIDKGPKIIPEKRVDINGSPINPVSRDYPSEFIQTGISTIDGLNTLVRGQKLPIFSGSGLPHNNVA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METS3 (V-type ATP synthase beta chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=atpB PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.139e-47
Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY T++ V+GPL++++ V+G  Y EIV+I   +G  R GQVLEV  + AV+QVFEGT+ ++ K T  +FTG+  K  VS DM+GR+FNG GKPID GP I+P+  LDI+GS +NP+ R +PEE IQTGISTID MN++ RGQK+P+FS +GLPHNE+A
Sbjct:    9 EYTTISEVSGPLMVVEGVEGVGYNEIVDIETPNGEKRSGQVLEVTDDVAVIQVFEGTTDLNTKNTKARFTGQTAKIGVSRDMMGRMFNGIGKPIDGGPEIIPDEELDINGSPMNPASREFPEEFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNELA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_PYRFU (V-type ATP synthase beta chain OS=Pyrococcus furiosus GN=atpB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.538e-47
Identity = 91/161 (56.52%), Postives = 117/161 (72.67%), Query Frame = 1
Query:  127 VAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            +A EY T++ + GPL+I++ VKG  Y E+V I    G  R+GQVL+     A+VQVFEGT  +D K T V+FTGE LK PVS+DMLGRIFNG GKPID GP I+PE   D+ G+ +NP  R YP + IQTGIS ID MN++ RGQK+P+FS +GLPHN++A
Sbjct:    1 MAKEYSTISRIYGPLMIVEGVKGVAYGEVVEIETEWGEKRKGQVLDARENLAIVQVFEGTRDLDIKTTRVRFTGETLKVPVSMDMLGRIFNGIGKPIDGGPEIIPEDRRDVHGAPLNPVARAYPRDFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNKLA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_ENTFA (V-type ATP synthase beta chain OS=Enterococcus faecalis GN=atpB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.315e-47
Identity = 88/158 (55.70%), Postives = 123/158 (77.85%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRT+  V GPL+I++KV G KY E++ +R+ +G +R+GQVLE++G+KA+VQ+FEGTS I+ + + V+F G  L+  VS DM+GR+F+G G+  DNGP +LPE  LDI+G  INP  R YP+E IQTGIS ID +N++ RGQK+P+FSA+GLPH E+A
Sbjct:    4 EYRTINEVVGPLMIVEKVAGVKYEELIEVRMQNGEIRQGQVLEINGDKAMVQIFEGTSNINIRDSKVRFLGHPLELGVSPDMMGRVFDGLGRLKDNGPELLPEKKLDINGEVINPVARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSASGLPHKELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METAC (V-type ATP synthase beta chain OS=Methanosarcina acetivorans GN=atpB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.329e-47
Identity = 92/158 (58.23%), Postives = 121/158 (76.58%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+T +AGPL+ ++K +   Y EIVNI++ DGT+RRGQVL+   +  VVQVFEGT G+D K   V FTGE LK P S+D+LGRI +GSG P D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA
Sbjct:    4 EYKTITQIAGPLIFVEKTEPVGYNEIVNIKMTDGTVRRGQVLDSSSDIVVVQVFEGTGGLD-KDCGVIFTGETLKLPASIDLLGRILSGSGDPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA 160          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_CLOPS6.679e-4858.23V-type ATP synthase beta chain OS=Clostridium perf... [more]
VATB_CLOPE6.679e-4858.23V-type ATP synthase beta chain OS=Clostridium perf... [more]
VATB_CLOP16.679e-4858.23V-type ATP synthase beta chain OS=Clostridium perf... [more]
VATB_CLOBB6.679e-4858.23V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBA6.679e-4858.23V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_FUSNN8.724e-4856.96V-type ATP synthase beta chain OS=Fusobacterium nu... [more]
VATB_METS31.139e-4756.96V-type ATP synthase beta chain OS=Methanobrevibact... [more]
VATB_PYRFU2.538e-4756.52V-type ATP synthase beta chain OS=Pyrococcus furio... [more]
VATB_ENTFA3.315e-4755.70V-type ATP synthase beta chain OS=Enterococcus fae... [more]
VATB_METAC4.329e-4758.23V-type ATP synthase beta chain OS=Methanosarcina a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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