DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THEPX (V-type ATP synthase beta chain OS=Thermoanaerobacter sp. (strain X514) GN=atpB PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.654e-47
Identity = 86/158 (54.43%), Postives = 123/158 (77.85%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+TV  + GPL++++KV+G KY E+V I  G G +RRGQVLEV+G+KA+VQ+FEG++G++     V+F G+ ++  VS+DMLGR+F+G G+P D GP I+PE  LDI+G+ INP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++A
Sbjct:    4 EYKTVREIVGPLMLVEKVEGVKYNELVEIETGSGEIRRGQVLEVNGDKALVQLFEGSTGLNINDCKVRFVGKSIELGVSIDMLGRVFDGLGRPRDKGPMIIPEKRLDINGNPINPTARDYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_THEP3 (V-type ATP synthase beta chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=atpB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.385e-47
Identity = 86/158 (54.43%), Postives = 123/158 (77.85%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+TV  + GPL++++KV+G KY E+V I  G G +RRGQVLEV+G+KA+VQ+FEG++G++     V+F G+ ++  VS+DMLGR+F+G G+P D GP I+PE  LDI+G+ INP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++A
Sbjct:    4 EYKTVREIVGPLMLVEKVEGVKYNELVEIETGTGEIRRGQVLEVNGDKALVQLFEGSTGLNINDCKVRFVGKSIELGVSIDMLGRVFDGLGRPRDKGPMIIPEKRLDINGNPINPTARDYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METJA (V-type ATP synthase beta chain OS=Methanocaldococcus jannaschii GN=atpB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.385e-47
Identity = 93/164 (56.71%), Postives = 118/164 (71.95%), Query Frame = 1
Query:  118 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            T   A+EY +V  +AGPL+I++ V+G  Y EIV +   DG  R GQVLE     AVVQVFEGT+G+  K T V+FTG   K  VS++MLGRIFNG+GKPID GP I+PE  LDI+G  +NP  R  P + IQTGISTID MN++ RGQK+P+FS +GLPHN++A
Sbjct:    3 TAASAIEYSSVKSIAGPLLIVEGVEGAAYGEIVEVICPDGEKRMGQVLEAREGLAVVQVFEGTTGLSTKDTRVRFTGRTAKIGVSMEMLGRIFNGAGKPIDGGPEIVPEKELDINGYPLNPVSRKVPSDFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNQLA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METBA (V-type ATP synthase beta chain OS=Methanosarcina barkeri GN=atpB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.645e-47
Identity = 89/158 (56.33%), Postives = 121/158 (76.58%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+T +AGPLV ++K +   Y EIV I L DGT RRG+VL+   +  V+Q+FEGT+G+D +   V FTGE LK P S+D+LGRI +GSG+P+D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA
Sbjct:    4 EYKTITQIAGPLVFVEKTEPVGYKEIVTINLPDGTTRRGEVLDSSSDIVVIQIFEGTTGLDKECGVV-FTGETLKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA 160          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_UNCMA (V-type ATP synthase beta chain OS=Uncultured methanogenic archaeon RC-I GN=atpB PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.260e-46
Identity = 90/158 (56.96%), Postives = 122/158 (77.22%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T++ +AGPL+ + K +   Y E+VNI L DGT++RGQVL+   +   VQVFEGTSGI ++ ++V+F GE +K PVS DMLGRI +GSG+P+D GP I+PE  L+I G++INP  R  P++ IQTGISTID MN++ RGQK+P+FS +GLPHNEIA
Sbjct:    3 EYKTISEIAGPLLFVRKTEPVGYQELVNIVLSDGTVKRGQVLDSSNDVVAVQVFEGTSGI-SRDSSVKFLGETIKMPVSKDMLGRILSGSGEPLDGGPAIIPEKRLEIVGAAINPYSRRQPKDFIQTGISTIDGMNTLVRGQKLPIFSGSGLPHNEIA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METMJ (V-type ATP synthase beta chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=atpB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.645e-46
Identity = 91/158 (57.59%), Postives = 120/158 (75.95%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTV  +AGPLV ++K +   Y E+VNI   DGT++RGQVL+   E  VVQVFE T+GI  + + ++FTGE +K PV  DMLGRI +G GKPID GP I+PE  L+I+G++INP  R+ PE+ IQTGISTID  N++ RGQK+P+FSA+GLPHN++A
Sbjct:    3 EYRTVAQIAGPLVFVEKTEPVGYSELVNIVTADGTVKRGQVLDTSDEIVVVQVFETTAGI-GRDSGIRFTGETIKMPVGKDMLGRILSGGGKPIDGGPDIVPEKRLEITGAAINPYARSSPEDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNDVA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METBF (V-type ATP synthase beta chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=atpB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.645e-46
Identity = 88/158 (55.70%), Postives = 121/158 (76.58%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+T +AGPLV ++K +   Y EIV I + DGT RRG+VL+   +  V+Q+FEGT+G+D +   V FTGE LK P S+D+LGRI +GSG+P+D GP I+P+  LDI+G+++NP  R  P++ IQTGISTID  N++ RGQK+P+FSA+GLPHNEIA
Sbjct:    4 EYKTITQIAGPLVFVEKTEPVGYKEIVTINMPDGTTRRGEVLDSSSDIVVIQIFEGTTGLDKECGVV-FTGETLKLPASIDLLGRILSGSGEPLDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIFSASGLPHNEIA 160          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOTH (V-type ATP synthase beta chain OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpB PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.645e-46
Identity = 86/158 (54.43%), Postives = 122/158 (77.22%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRT+T VAGPL+++ KV+G KY E+  I L +G +RR +VLEVDG+ A+VQ+FE ++GI+   + V+F G  ++ PVS+DMLGR+F+G GKP+D GP I+P+  LDI+G  +NP+ R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++A
Sbjct:    4 EYRTITEVAGPLMLVQKVEGVKYGELGEIELANGEIRRCKVLEVDGQNALVQLFESSTGINVATSKVRFLGRSIELPVSMDMLGRVFSGMGKPLDGGPNIIPDKRLDINGLPMNPAARNYPSEFIQTGISAIDGLNTLVRGQKLPIFSGSGLPHAQLA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METPE (V-type ATP synthase beta chain OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=atpB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.149e-46
Identity = 92/158 (58.23%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRT+  +AGPLV ++K +   Y E+VNI L DGT++RGQVL+   +  VVQVFE T+GI  K + V+FTGE +K PV  DMLGRI +GSGKPID GP I+PE  LDI+G++INP  R  P + I+TGISTID  N++ RGQK+P+FS AGLPHN +A
Sbjct:    3 EYRTINKIAGPLVFIEKTEPIGYEELVNIVLYDGTIKRGQVLDTSDDLVVVQVFETTTGI-GKDSGVRFTGETIKMPVGRDMLGRILSGSGKPIDGGPEIVPEKRLDITGAAINPYARASPSDFIETGISTIDGTNTLVRGQKLPIFSGAGLPHNNVA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METB6 (V-type ATP synthase beta chain OS=Methanoregula boonei (strain 6A8) GN=atpB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.665e-46
Identity = 90/158 (56.96%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRT+T +AGPLV ++K +   Y E+VNI L DGT++RGQVL+   +  VVQ+FE T+GI  + + V+FTGE +K PV  +MLGRI +G GKPID GP I+PE  LDI+G++INP  R  P + IQTGISTID  N++ RGQK+P+FS AGLPHN +A
Sbjct:    3 EYRTITKIAGPLVFVEKTEPIGYQELVNIVLSDGTIKRGQVLDTSDDLVVVQIFETTTGI-GRDSGVRFTGETIKMPVGREMLGRILSGGGKPIDGGPEIVPEKRLDITGAAINPWARNSPSDFIQTGISTIDGTNTLVRGQKLPIFSGAGLPHNNVA 159          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_THEPX5.654e-4754.43V-type ATP synthase beta chain OS=Thermoanaerobact... [more]
VATB_THEP37.385e-4754.43V-type ATP synthase beta chain OS=Thermoanaerobact... [more]
VATB_METJA7.385e-4756.71V-type ATP synthase beta chain OS=Methanocaldococc... [more]
VATB_METBA9.645e-4756.33V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_UNCMA1.260e-4656.96V-type ATP synthase beta chain OS=Uncultured metha... [more]
VATB_METMJ1.645e-4657.59V-type ATP synthase beta chain OS=Methanoculleus m... [more]
VATB_METBF1.645e-4655.70V-type ATP synthase beta chain OS=Methanosarcina b... [more]
VATB_CLOTH1.645e-4654.43V-type ATP synthase beta chain OS=Clostridium ther... [more]
VATB_METPE2.149e-4658.23V-type ATP synthase beta chain OS=Methanosphaerula... [more]
VATB_METB63.665e-4656.96V-type ATP synthase beta chain OS=Methanoregula bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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