DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB1_METHJ (V-type ATP synthase beta chain 1 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpB1 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.787e-46
Identity = 92/158 (58.23%), Postives = 119/158 (75.32%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRT+T VAGPLV ++K +   Y E+VN+ L DG+ +RGQVL+   +  VVQVFE T+GI  K T V+FTGE +K PV  DMLGRI +G+GKP D GP I+PE  L+I+G++INP  R  P + IQTGISTID+ N++ RGQK+P+FS +GLPHNEIA
Sbjct:    3 EYRTITQVAGPLVFVEKTEPVGYQELVNLVLADGSEKRGQVLDTSDDIVVVQVFETTTGI-GKDTGVRFTGETIKMPVGKDMLGRILSGAGKPKDGGPDIVPEKRLEITGAAINPWARGSPRQFIQTGISTIDLTNTLVRGQKLPIFSGSGLPHNEIA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_ARCFU (V-type ATP synthase beta chain OS=Archaeoglobus fulgidus GN=atpB PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 6.252e-46
Identity = 91/158 (57.59%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+T VAGPLV ++K +   Y E+V I L DG+ RRGQVL+   +  VVQVFEGT G+D   +TV+FTG+++K   S DMLGRI +GSG+PID GP I+PE    I G++INP  R YP E IQTGIS ID MN++ RGQK+P+FS +GLPHN+IA
Sbjct:    3 EYKTITQVAGPLVFVEKTEPVAYGELVTITLPDGSTRRGQVLDTSKDVVVVQVFEGTRGVDTS-STVRFTGDIVKLNCSQDMLGRILSGSGEPIDGGPKIVPEERRPIVGAAINPYARQYPREFIQTGISAIDGMNTLVRGQKLPIFSGSGLPHNDIA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METBU (V-type ATP synthase beta chain OS=Methanococcoides burtonii (strain DSM 6242) GN=atpB PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.376e-45
Identity = 88/158 (55.70%), Postives = 119/158 (75.32%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+  V+GPL+ L+K +   Y E+V I L DGT +RGQVL+   +  VVQVFEGT G+ N+ + V F+GE +K PVS DMLGRI +G+G+P+D GP I+P+  +DI+G+S+NP  R  PE+ IQTGISTID  N++ RGQK+P+FS +GLPHNEIA
Sbjct:    4 EYKTIVEVSGPLIFLEKTEPVGYGELVQINLPDGTTKRGQVLDTSADMVVVQVFEGTVGL-NEESGVVFSGETIKLPVSKDMLGRILSGAGEPLDGGPRIIPDKRVDINGASMNPYSRMPPEDFIQTGISTIDGTNTLVRGQKLPIFSGSGLPHNEIA 160          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_STAMF (V-type ATP synthase beta chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpB PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.027e-45
Identity = 86/149 (57.72%), Postives = 110/149 (73.83%), Query Frame = 1
Query:  163 GPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            G L+I + +KG  Y E+V + LG G  R GQV++V  +  ++QVF G S ID K + V++ GE LK PVS+DMLGRIF+G G+PID GPPI+PE YLDI+GS INP+ R  P E I+TGIS ID +NSI RGQK+P+FS +GLPHN IA
Sbjct:   19 GSLLIAEPMKGVSYGEVVEVVLGSGETRLGQVIDVSRDATIIQVFGGVSDIDLKISKVRYRGETLKLPVSIDMLGRIFDGLGRPIDGGPPIVPEDYLDINGSPINPASRLPPSEFIETGISAIDGLNSIVRGQKLPIFSGSGLPHNRIA 167          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METM6 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=atpB PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.011e-44
Identity = 88/163 (53.99%), Postives = 117/163 (71.78%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN++A
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGVAYGEIVDITTPNGEKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNKLA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METM7 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=atpB PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.627e-44
Identity = 88/163 (53.99%), Postives = 117/163 (71.78%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN++A
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNKLA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METMP (V-type ATP synthase beta chain OS=Methanococcus maripaludis GN=atpB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.430e-44
Identity = 87/163 (53.37%), Postives = 117/163 (71.78%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTG+STID  N++ RGQKIP+FS +GLPHN++A
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSYDMLGRIFNGAGKPLDGGPEIIAEEKLDINGYPLNPVSRNPPNAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_HALMA (V-type ATP synthase beta chain OS=Haloarcula marismortui GN=atpB PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.430e-44
Identity = 85/158 (53.80%), Postives = 115/158 (72.78%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+T ++GPLV ++  +   Y +IV I L DG  RRGQVLE   +   +QVFEGT GID    +V+F GE +K PV+ D+LGR+ +G+G+PID GP I+P+   DI G +INP  R YPEE IQTG+S ID MN++ RGQK+P+FSA+GLPHN++A
Sbjct:    3 EYQTITEISGPLVFVETDEPVGYDDIVEIELSDGETRRGQVLESASDYVAIQVFEGTEGIDRD-ASVRFLGETMKMPVTEDLLGRVMDGTGQPIDGGPEIVPDERRDIVGEAINPFSREYPEEFIQTGVSAIDGMNTLVRGQKLPIFSASGLPHNDLA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METM5 (V-type ATP synthase beta chain OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=atpB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.851e-44
Identity = 87/163 (53.37%), Postives = 117/163 (71.78%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            ++  +EY +V+ +AGPL+++D ++G  Y EIV+I   +G  R GQVLE   E AVVQVFEGTS ++   T V+FTG+  K  VS DMLGRIFNG+GKP+D GP I+ E  LDI+G  +NP  R  P   +QTG+STID  N++ RGQKIP+FS +GLPHN++A
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIDGIEGIAYGEIVDITTPNGDKRTGQVLEAREEIAVVQVFEGTSELNTSETKVRFTGDTAKIGVSHDMLGRIFNGAGKPLDGGPEIIAEKKLDINGYPLNPVSRNPPNAFVQTGVSTIDGTNTLVRGQKIPIFSGSGLPHNKLA 166          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_META3 (V-type ATP synthase beta chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=atpB PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.851e-44
Identity = 86/164 (52.44%), Postives = 116/164 (70.73%), Query Frame = 1
Query:  118 TLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            +LE  +EY +V+ +AGPL++++ +KG  Y EIV+I    G  R GQVLE   + AVVQVFEGT+ ++   T ++F GE  K  VS DMLGRIFNG+GKP+D GP I+ E  +DI+G  +NP  R  P + +QTGISTID  N++ RGQKIP+FS +GLPHN +A
Sbjct:    3 SLEKNIEYTSVSSIAGPLIVVEGIKGVAYGEIVSITCPSGEKRTGQVLEAREDVAVVQVFEGTTALNTSETKIRFVGETAKLGVSTDMLGRIFNGAGKPLDGGPDIIAEDKIDINGYPLNPVSRQSPNDFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNLLA 166          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB1_METHJ4.787e-4658.23V-type ATP synthase beta chain 1 OS=Methanospirill... [more]
VATB_ARCFU6.252e-4657.59V-type ATP synthase beta chain OS=Archaeoglobus fu... [more]
VATB_METBU2.376e-4555.70V-type ATP synthase beta chain OS=Methanococcoides... [more]
VATB_STAMF9.027e-4557.72V-type ATP synthase beta chain OS=Staphylothermus ... [more]
VATB_METM62.011e-4453.99V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_METM72.627e-4453.99V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_METMP3.430e-4453.37V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_HALMA3.430e-4453.80V-type ATP synthase beta chain OS=Haloarcula maris... [more]
VATB_METM55.851e-4453.37V-type ATP synthase beta chain OS=Methanococcus ma... [more]
VATB_META35.851e-4452.44V-type ATP synthase beta chain OS=Methanococcus ae... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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