DN617538

Overview
NameDN617538
Unique NameDN617538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617538_ssr10 microsatellite DN617538_ssr10:10..23. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOBM (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=atpB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.642e-44
Identity = 85/158 (53.80%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOBL (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=atpB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.642e-44
Identity = 85/158 (53.80%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOBK (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Okra / Type B1) GN=atpB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.642e-44
Identity = 85/158 (53.80%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOBH (V-type ATP synthase beta chain OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.642e-44
Identity = 85/158 (53.80%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_CLOB1 (V-type ATP synthase beta chain OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=atpB PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.642e-44
Identity = 85/158 (53.80%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTV  V GPL+++D+V G  + E+V I L +G  RRG+VLE++ +KA+VQ+FEG++GI+ K   V+F G+ L+  VS DMLGR+F+G G P D GP I+P+  LDI+G  INP  R YP+E IQTG+S ID +N++ RGQK+P+FS +GLPH E+A
Sbjct:    4 EYRTVKEVVGPLMLVDQVDGVSFDELVEIELHNGEKRRGKVLEINKDKAMVQLFEGSAGINLKGAKVKFLGKPLELGVSEDMLGRVFDGLGNPKDGGPKIIPDKKLDINGIPINPVARNYPDEFIQTGVSAIDGLNTLVRGQKLPVFSGSGLPHAELA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METLZ (V-type ATP synthase beta chain OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=atpB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 9.981e-44
Identity = 89/158 (56.33%), Postives = 116/158 (73.42%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+TV+ VAGPL+ ++K +   Y E V++ L DGTM+RGQVL+   +  VVQ FE T+G+  + T V+F GE  K PVS  MLGRI +G GKPID GP I+P+  LDI+G++INP  R  P + IQTGISTID  N++ RGQK+P+FS+AGLPHNEIA
Sbjct:    3 EYKTVSKVAGPLLFVEKTEPVSYEEQVSLVLADGTMKRGQVLDTSEDLVVVQCFETTTGL-GRDTGVRFLGETFKMPVSKTMLGRILSGGGKPIDGGPAIVPDKRLDINGAAINPYARGTPRDFIQTGISTIDGTNTLVRGQKLPIFSSAGLPHNEIA 159          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METTP (V-type ATP synthase beta chain OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=atpB PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.304e-43
Identity = 83/158 (52.53%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EY+T+T ++GPLV ++K +   Y E+V IR   G ++RGQVL+   E  VVQVFEGT G+ +K ++V+FTG+V+K P+S  ++GR+ +GSG+P D GPPI+PE   +I G++INP+ R  P   IQTGISTID  N++ RGQK+P+FS AGLPHN++A
Sbjct:    4 EYKTITEISGPLVFVEKTEPVGYGELVEIRTASGEVKRGQVLDTSDEIVVVQVFEGTGGL-SKDSSVRFTGDVIKMPLSPSIIGRVLSGSGRPRDGGPPIVPEVEREIIGAAINPASREKPRAFIQTGISTIDGTNTLVRGQKLPIFSGAGLPHNDVA 160          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB2_METHJ (V-type ATP synthase beta chain 2 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpB2 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.904e-43
Identity = 88/168 (52.38%), Postives = 118/168 (70.24%), Query Frame = 1
Query:  106 MEEGTLEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            M+ G+L + +EY+TV  V+GPL+ +++ K   + E   I L DG  R GQ+L++  + AVVQVFEGT GID+  TTV+FTG+     VS DMLGR+ +G G+P D GP I+PEA LDI+G  INP  R  P E IQTGIS ID +N++ RGQK+P+FS AGLP N++A
Sbjct:    1 MQHGSL-ITVEYQTVNYVSGPLIFVERPKEISFGETAQIILPDGEARTGQILDISEDIAVVQVFEGTRGIDSHVTTVRFTGQSPLLDVSYDMLGRVLDGVGRPRDGGPEIIPEARLDIAGMPINPYSRDKPAEFIQTGISAIDALNTLVRGQKLPIFSGAGLPANQLA 167          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB1_CLOTE (V-type ATP synthase beta chain 1 OS=Clostridium tetani GN=atpB1 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.793e-43
Identity = 84/158 (53.16%), Postives = 118/158 (74.68%), Query Frame = 1
Query:  136 EYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            EYRTV  V GPL+++D V+  K+ E+V I +  G +RRG+VLE++ +KA+VQ+FEG++GI+ K +  +F G+ L+  VS DMLGR+F+G G+P D GP I+PE  LDI+G  INP  R YP E IQTGIS ID +N++ RGQK+P+FS +GLPH ++A
Sbjct:    4 EYRTVKEVVGPLMLVDGVENVKFDELVEIEIQTGEIRRGRVLEINEDKALVQLFEGSAGINIKGSKAKFLGKPLEISVSEDMLGRVFDGLGRPKDEGPRIIPEKRLDINGIPINPVARNYPSEFIQTGISAIDGLNTLVRGQKLPVFSGSGLPHAQLA 161          
BLAST of DN617538 vs. ExPASy Swiss-Prot
Match: VATB_METVS (V-type ATP synthase beta chain OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=atpB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.954e-43
Identity = 86/163 (52.76%), Postives = 116/163 (71.17%), Query Frame = 1
Query:  121 LEVAMEYRTVTGVAGPLVILDKVKGPKYYEIVNIRLGDGTMRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIA 609
            ++  +EY +V+ +AGPL++++ ++G  Y EIV+I   +G  R GQVLE   + AVVQVFEGTS ++   T V+FTGE  K  VS DMLGRIFNG+GKP+D GP I+ E  +DI+G  +NP  R  P   +QTGISTID  N++ RGQKIP+FS +GLPHN +A
Sbjct:    4 MQKTIEYTSVSRIAGPLMVIEGIEGIAYGEIVDITTPNGEKRTGQVLEAREDIAVVQVFEGTSELNTSETRVRFTGETAKIGVSKDMLGRIFNGAGKPLDGGPEIIAEKKVDINGYPLNPVSRNPPNAFVQTGISTIDGTNTLVRGQKIPIFSGSGLPHNMLA 166          
The following BLAST results are available for this feature:
BLAST of DN617538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
VATB_CLOBM7.642e-4453.80V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBL7.642e-4453.80V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBK7.642e-4453.80V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOBH7.642e-4453.80V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_CLOB17.642e-4453.80V-type ATP synthase beta chain OS=Clostridium botu... [more]
VATB_METLZ9.981e-4456.33V-type ATP synthase beta chain OS=Methanocorpuscul... [more]
VATB_METTP1.304e-4352.53V-type ATP synthase beta chain OS=Methanosaeta the... [more]
VATB2_METHJ2.904e-4352.38V-type ATP synthase beta chain 2 OS=Methanospirill... [more]
VATB1_CLOTE3.793e-4353.16V-type ATP synthase beta chain 1 OS=Clostridium te... [more]
VATB_METVS4.954e-4352.76V-type ATP synthase beta chain OS=Methanococcus va... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617538 ID=DN617538; Name=DN617538; organism=Citrus sinensis; type=EST; length=611bp
CTCTCTCTTTCTCTCTCTCTCTCACACACACTCACAGAGATCACAAGAAA
GACCAAAAAAAAAGAAAAAAAATTGAAAATGGGTGTGGCACAAAACAATG
TTGACATGGAGGAGGGTACGCTGGAAGTCGCCATGGAGTACAGAACGGTC
ACCGGAGTTGCTGGGCCTCTAGTTATCCTTGATAAAGTCAAGGGACCCAA
ATATTATGAGATTGTCAATATTCGGTTGGGAGATGGAACAATGCGACGTG
GTCAGGTCCTAGAAGTTGATGGAGAGAAAGCTGTTGTTCAGGTCTTTGAA
GGGACATCCGGAATTGACAATAAATTTACAACTGTGCAGTTTACAGGGGA
GGTTCTGAAGACTCCTGTCTCATTGGATATGCTTGGGCGCATTTTTAATG
GTTCTGGGAAACCCATTGATAATGGTCCCCCAATTTTGCCGGAGGCTTAC
TTGGATATATCCGGAAGTTCTATCAACCCTAGTGAGAGAACCTATCCTGA
AGAGATGATACAGACAGGGATTTCTACCATTGATGTGATGAACTCCATTG
CTAGAGGACAAAAGATCCCTCTTTTTTCTGCTGCCGGTCTTCCCCATAAT
GAAATTGCTGC
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