DN617537

Overview
NameDN617537
Unique NameDN617537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_ENCCU (V-type proton ATPase subunit B OS=Encephalitozoon cuniculi GN=VMA2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.309e-15
Identity = 35/67 (52.24%), Postives = 55/67 (82.09%), Query Frame = -3
Query:  406 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYS 606
            VGE++LS+ED + +EFL++FER+F++Q   + R + QSLD+AW LL++FPRE+L+RIP   LD+++S
Sbjct:  404 VGEDSLSAEDRISIEFLERFEREFISQRHDELRTVDQSLDIAWDLLKVFPREMLNRIPSDILDEFHS 470          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_DICT6 (V-type ATP synthase beta chain OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=atpB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.284e-13
Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            +GE AL+ ED+ +LEF + FE +F+ QG Y++R+IF++LDL W LLR  PR  L RI  + LD+++ ++ A+
Sbjct:  389 LGEAALTEEDVQFLEFAEAFEMEFIKQGEYENRSIFETLDLGWKLLRRLPRSSLKRIRPEYLDEFWGKEDAS 460          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_PYRHO (V-type ATP synthase beta chain OS=Pyrococcus horikoshii GN=atpB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  403 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 606
            VGEEALS  D  YLEF D+FER+FVAQG Y+ R+I ++LDL W LL I P   L R+  + + +Y+ +
Sbjct:  392 VGEEALSETDKKYLEFADRFEREFVAQGYYEDRSIEETLDLGWELLSILPESELKRVKKEMIMKYHPK 459          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_PYRAB (V-type ATP synthase beta chain OS=Pyrococcus abyssi GN=atpB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.177e-12
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  403 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 606
            VGEEALS  D  YLEF D+FER+FVAQG Y+ R+I ++LDL W LL I P   L R+  + + +Y+ +
Sbjct:  392 VGEEALSETDKKYLEFADRFEREFVAQGYYEDRSIEETLDLGWELLSILPESELKRVKKEMIMKYHPK 459          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_DICTD (V-type ATP synthase beta chain OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=atpB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.622e-12
Identity = 32/72 (44.44%), Postives = 52/72 (72.22%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            +GE AL+ ED+ +LEF + FE +F+ QG Y++R+IF++L+L W LLR  PR  L RI  + LD+++ ++ A+
Sbjct:  389 LGEAALTEEDVQFLEFAEAFEMEFIKQGEYENRSIFETLNLGWKLLRRLPRASLKRIRPEYLDEFWGKEDAS 460          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_ARCFU (V-type ATP synthase beta chain OS=Archaeoglobus fulgidus GN=atpB PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.630e-12
Identity = 32/68 (47.06%), Postives = 47/68 (69.12%), Query Frame = -3
Query:  403 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 606
            VGEEALS  D L+L+F D+FER+FV QG Y+ R+I  +LDL W LL + P   L ++  K +++Y+ +
Sbjct:  387 VGEEALSERDRLFLKFADEFERRFVQQGRYEDRDIEYTLDLGWELLAMLPERELTKVERKFIEKYHPK 454          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_NATPD (V-type ATP synthase beta chain OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=atpB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.301e-11
Identity = 33/69 (47.83%), Postives = 47/69 (68.12%), Query Frame = -3
Query:  400 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRD 606
            VG EALS  D  YL+F D+FE +FV QG   +R++ ++LDLAW LL   P+E L+RI  + +++YY  D
Sbjct:  395 VGREALSERDNKYLDFADRFEEEFVQQGYDTNRDVEETLDLAWELLSDLPKEELNRIDEEAIEEYYVED 463          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_PYRFU (V-type ATP synthase beta chain OS=Pyrococcus furiosus GN=atpB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.220e-11
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  403 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 606
            VGEEALS  D  YLEF D+FER+FVAQG  + R+I ++LDL W LL I P   L R+  + + +Y+ +
Sbjct:  389 VGEEALSETDKKYLEFADRFEREFVAQGYDEDRSIEETLDLGWELLAILPETELKRVKKEMIMKYHPK 456          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_METJA (V-type ATP synthase beta chain OS=Methanocaldococcus jannaschii GN=atpB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = -3
Query:  403 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSR 606
            VGEEAL+  D  YL+F D+FE KFV QG  + R+I ++LDL W LL I P E L R+  + +++Y+ +
Sbjct:  394 VGEEALTDRDRAYLKFADEFEDKFVRQGKDEDRSIEETLDLLWELLAILPEEELKRVDRELIEKYHPK 461          
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_HALSA (V-type ATP synthase beta chain OS=Halobacterium salinarium GN=atpB PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = -3
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VG EALS  D  YL+F D+FE +F+ QG   +R+I ++LDL W LL +FP+  L+R+    ++ +Y  D A+
Sbjct:  395 VGREALSERDNRYLDFADRFEAEFIDQGFKTNRDIEETLDLGWELLSMFPKTELNRVDEDLIEDHYVEDVAD 466          
The following BLAST results are available for this feature:
BLAST of DN617537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
VATB_ENCCU3.309e-1552.24V-type proton ATPase subunit B OS=Encephalitozoon ... [more]
VATB_DICT65.284e-1345.83V-type ATP synthase beta chain OS=Dictyoglomus the... [more]
VATB_PYRHO1.177e-1251.47V-type ATP synthase beta chain OS=Pyrococcus horik... [more]
VATB_PYRAB1.177e-1251.47V-type ATP synthase beta chain OS=Pyrococcus abyss... [more]
VATB_DICTD2.622e-1244.44V-type ATP synthase beta chain OS=Dictyoglomus tur... [more]
VATB_ARCFU7.630e-1247.06V-type ATP synthase beta chain OS=Archaeoglobus fu... [more]
VATB_NATPD1.301e-1147.83V-type ATP synthase beta chain OS=Natronomonas pha... [more]
VATB_PYRFU2.220e-1150.00V-type ATP synthase beta chain OS=Pyrococcus furio... [more]
VATB_METJA4.945e-1147.06V-type ATP synthase beta chain OS=Methanocaldococc... [more]
VATB_HALSA8.435e-1143.06V-type ATP synthase beta chain OS=Halobacterium sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617537 ID=DN617537; Name=DN617537; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTGGAAAACATTCGAACAGGTTTTTTTCCCTCTCAAGGATAAAGT
CCAACAAAGACAGAATTACAGGATAAATAGAATAATCATCAAACTTGGGC
ATTATAATCCTCACTACCATGGTTTCAATATTGATAAAAAGTATCCAGAT
CACACTAATAAATAGAGATACAGGAATTACAAGATCTAAAAAGCACTCCG
CTGAAAGAATATTTGCATCTTTTGACTAGACGAAGAGCTTTGCACGGGGG
CCTCAAGTGGACTACAACCTTTATTATTTCTGCTCAACGGAGAAATGCAA
CCTATATCAAAAAGCTGGTGAATAAACAAATTGTCGACAAAACCAACGAG
GCAGCAAGGTACATGTCAGTACGAGAGACCTTCTTCATCAATTAGCTGCA
TCACGGCTGTAGTACTGGTCAAGGGTCTTTCCTGGTATACGATGGAGAAG
CTCACGAGGAAAGATGCGAAGAAGTGTCCATGCCAGATCAAGAGATTGGA
AGATATTCCTAGAGTCATAAGCTCCTTGAGCAACAAATTTTCTCTCAAAC
TTATCCAGGAACTCTAAGTACAGCAGATCCTCAGAAGAAAGTGCTTCTTC
TCCGACCA
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