DN617537

Overview
NameDN617537
Unique NameDN617537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2646 contig Csv1_Contig2646:974..1582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617537 vs. ExPASy Swiss-Prot
Match: VATB_HALS3 (V-type ATP synthase beta chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=atpB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 31/72 (43.06%), Postives = 47/72 (65.28%), Query Frame = -3 
Query:  391 VGEEALSSEDLLYLEFLDKFERKFVAQGAYDSRNIFQSLDLAWTLLRIFPRELLHRIPGKTLDQYYSRDAAN 606
            VG EALS  D  YL+F D+FE +F+ QG   +R+I ++LDL W LL +FP+  L+R+    ++ +Y  D A+
Sbjct:  395 VGREALSERDNRYLDFADRFEAEFIDQGFKTNRDIEETLDLGWELLSMFPKTELNRVDEDLIEDHYVEDVAD 466
The following BLAST results are available for this feature:
BLAST of DN617537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
VATB_HALS38.435e-1143.06V-type ATP synthase beta chain OS=Halobacterium sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617537 ID=DN617537; Name=DN617537; organism=Citrus sinensis; type=EST; length=608bp
TTTTTTTGGAAAACATTCGAACAGGTTTTTTTCCCTCTCAAGGATAAAGT
CCAACAAAGACAGAATTACAGGATAAATAGAATAATCATCAAACTTGGGC
ATTATAATCCTCACTACCATGGTTTCAATATTGATAAAAAGTATCCAGAT
CACACTAATAAATAGAGATACAGGAATTACAAGATCTAAAAAGCACTCCG
CTGAAAGAATATTTGCATCTTTTGACTAGACGAAGAGCTTTGCACGGGGG
CCTCAAGTGGACTACAACCTTTATTATTTCTGCTCAACGGAGAAATGCAA
CCTATATCAAAAAGCTGGTGAATAAACAAATTGTCGACAAAACCAACGAG
GCAGCAAGGTACATGTCAGTACGAGAGACCTTCTTCATCAATTAGCTGCA
TCACGGCTGTAGTACTGGTCAAGGGTCTTTCCTGGTATACGATGGAGAAG
CTCACGAGGAAAGATGCGAAGAAGTGTCCATGCCAGATCAAGAGATTGGA
AGATATTCCTAGAGTCATAAGCTCCTTGAGCAACAAATTTTCTCTCAAAC
TTATCCAGGAACTCTAAGTACAGCAGATCCTCAGAAGAAAGTGCTTCTTC
TCCGACCA
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