DN617535

Overview
NameDN617535
Unique NameDN617535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.160e-31
Identity = 72/146 (49.32%), Postives = 90/146 (61.64%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N+A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE--NNSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.434e-31
Identity = 73/146 (50.00%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL++Y +  V  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.097e-31
Identity = 66/143 (46.15%), Postives = 89/143 (62.24%), Query Frame = 1
Query:  169 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            K+  K  Y  KL  LLE+Y  I + + DNV S Q+  IR+ LRG++VVLMGKNTM++R ++     T    +  L+P ++GNVG +FT GDL             APAR G +AP DV +P GNTG++P +TSFFQ L +PTK
Sbjct:    4 KSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADTPE--YERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTK 144          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 67/148 (45.27%), Postives = 92/148 (62.16%), Query Frame = 1
Query:  154 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +V+  ++  K  Y  KL +L EEY + L+   DNVGS Q+Q IR+ +RG + +LMGKNTM+++ +R H  K  N +   L+P +  NVG +FTK DL            GAPA+ G +AP DV +PP NTG+ P +TSFFQ L IPTK
Sbjct:    1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.065e-30
Identity = 71/146 (48.63%), Postives = 89/146 (60.96%), Query Frame = 1
Query:  160 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TK
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLE--NNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTK 146          
BLAST of DN617535 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.522e-30
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 1
Query:  169 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTK 597
            K+  K  Y  KL  LLEEY  I + + DNV S Q+  IR+ LR   VVLMGKNTM++R ++       +  +  L+P ++GNVG +FT GDL             APAR G VAP+DV +P GNTG++P +TSFFQ L +PTK
Sbjct:    4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFL--VDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTK 144          
The following BLAST results are available for this feature:
BLAST of DN617535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
RLA0_RANSY4.160e-3149.3260S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_CHICK5.434e-3150.0060S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_NEUCR7.097e-3146.1560S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_RAT2.065e-3048.6360S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_PIG2.065e-3048.6360S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_MOUSE2.065e-3048.6360S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_HUMAN2.065e-3048.6360S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_CAEEL2.065e-3045.2760S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_BOVIN2.065e-3048.6360S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_PODAN3.522e-3046.1560S acidic ribosomal protein P0 OS=Podospora anser... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01F12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617535 ID=DN617535; Name=DN617535; organism=Citrus sinensis; type=EST; length=599bp
TTCTTTCACTCTCTTTGTATCTCGTTGAGGTTAAAGAGACGGCAACTCCG
CTGCTGTCCGCCTTGGCAAGCCGCTGCTTCGTCTTGGCCCTCGATTTTGT
ATAAATTTACAACTTTTTACCACCAACAAAAGTAGAACCAAATCCACGAA
ATGGTAGTGAAAGCATCGAAGGCCGAGAAGAAGATCGCGTACGACGCGAA
GCTATGCCAGTTGCTGGAAGAGTACACCCAAATCTTGGTGGCGGCCGCCG
ACAACGTGGGGTCCAATCAACTCCAGAACATTCGTAGGGGTCTGCGTGGA
GACTCCGTTGTGCTAATGGGAAAGAACACTATGATGAAGAGGACTATCAG
AATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCATCCCCC
TCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTGAAGGAA
GTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCGTGTTGG
TTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAGGTCTCG
ACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACCAAGAT
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